View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_115 (Length: 251)
Name: NF8319A_low_115
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41311253 - 41311027
Alignment:
| Q |
1 |
ttgaattgttctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
100 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311253 |
ttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
41311154 |
T |
|
| Q |
101 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311153 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
41311054 |
T |
|
| Q |
201 |
gatatgggtgatgcaagaatacacaat |
227 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
41311053 |
gatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43164931 - 43164710
Alignment:
| Q |
1 |
ttgaattgttctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
100 |
Q |
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|||||| ||||||||||||||||| ||||| || || |||||||||| ||| |||||||||||| |||||||||||||| |||| ||||||||| ||||| |
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| T |
43164931 |
ttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctc |
43164832 |
T |
|
| Q |
101 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
200 |
Q |
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| T |
43164831 |
ttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaa |
43164732 |
T |
|
| Q |
201 |
gatatgggtgatgcaagaatac |
222 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
43164731 |
gatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 30165681 - 30165883
Alignment:
| Q |
8 |
gttctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccaga |
107 |
Q |
| |
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||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||| |||| || |||||| ||||| ||| | |
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| T |
30165681 |
gttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaa |
30165780 |
T |
|
| Q |
108 |
tggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgg |
207 |
Q |
| |
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|| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| ||||||||||| |
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| T |
30165781 |
tgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgg |
30165868 |
T |
|
| Q |
208 |
gtgatgcaagaatac |
222 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30165869 |
gtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
9 |
ttctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
108 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | | |||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
109 |
ggtttttatagtgatt |
124 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 30125197 - 30124981
Alignment:
| Q |
11 |
ctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatgg |
110 |
Q |
| |
|
|||||||||||||| || || || || |||| | | |||| ||||| |||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |
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| T |
30125197 |
ctattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatga |
30125098 |
T |
|
| Q |
111 |
tttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtg |
210 |
Q |
| |
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|||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |||||||| ||||| |
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| T |
30125097 |
tttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtg |
30124998 |
T |
|
| Q |
211 |
atgcaagaatacacaat |
227 |
Q |
| |
|
||||| |||||| |||| |
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| T |
30124997 |
atgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 30131151 - 30131068
Alignment:
| Q |
11 |
ctattcattggctgatttattatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagaga |
94 |
Q |
| |
|
|||||||||||||| ||||| || || |||| || |||| ||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131151 |
ctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 30120109 - 30120068
Alignment:
| Q |
53 |
ttattattgcctttgatttaaaggaaatgacactgtcagaga |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||||||| |
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|
| T |
30120109 |
ttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
192 |
tacacttaagatatgggtgatgcaagaatacaca |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
48 |
ggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
109 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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