View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_124 (Length: 249)
Name: NF8319A_low_124
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 29323073 - 29323221
Alignment:
| Q |
84 |
ggtagtgaaataaatgagtcattgaaaaaactatattcaattaaagggtattttatgtatatataattaaatagggtaaaagtagttnnnnnnnttacct |
183 |
Q |
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| T |
29323073 |
ggtagtgaaataaatgagtcattgaaaaaactatattcaattaaagggtattttatgtatatataattaaatagggtaaaagtagttaaaaaaattacct |
29323172 |
T |
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| Q |
184 |
atatatctattttggttgtacgtcaacacctattaaacgcaaaactaca |
232 |
Q |
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| T |
29323173 |
atgtatctagtttggttgtacgacaaaaccaattaaatgcaaaactaca |
29323221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 29322998 - 29323038
Alignment:
| Q |
13 |
aatatcatttacagatagggttcgtgaaaaataaaagagtc |
53 |
Q |
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| T |
29322998 |
aatatcatttatagatagggtttgtgaaaaataaaagagtc |
29323038 |
T |
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