View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_129 (Length: 247)
Name: NF8319A_low_129
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_129 |
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| [»] chr2 (8 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2462830 - 2462602
Alignment:
| Q |
1 |
ataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaattga |
100 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
2462830 |
ataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagtga |
2462733 |
T |
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| Q |
101 |
aacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462732 |
aaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat |
2462649 |
T |
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| Q |
201 |
ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462648 |
ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg |
2462602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2466875 - 2466650
Alignment:
| Q |
1 |
ataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
2466875 |
ataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagtga |
2466778 |
T |
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| Q |
101 |
aacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat |
200 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466777 |
aaca----------------cttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat |
2466697 |
T |
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| Q |
201 |
ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg |
247 |
Q |
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| T |
2466696 |
ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg |
2466650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 3063274 - 3063395
Alignment:
| Q |
126 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
226 |
gtgagtttctccaaacaacctg |
247 |
Q |
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|||||||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctg |
3063395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 2458154 - 2458026
Alignment:
| Q |
116 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||| |
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| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat |
2458058 |
T |
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| Q |
216 |
ccaacacgttgtgagtttctccaaacaacctg |
247 |
Q |
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|||| ||| | || |||||||||||||||||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctg |
2458026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 2470100 - 2469975
Alignment:
| Q |
119 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
218 |
Q |
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|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca |
2470004 |
T |
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| Q |
219 |
acacgttgtgagtttctccaaacaacctg |
247 |
Q |
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| T |
2470003 |
atccgttgtgtgtttctccaaaccacctg |
2469975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 2474368 - 2474246
Alignment:
| Q |
122 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca |
221 |
Q |
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||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | |
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| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctc---cattatcacatttcactttggcacatccaata |
2474272 |
T |
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| Q |
222 |
cgttgtgagtttctccaaacaacctg |
247 |
Q |
| |
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|||| || |||||||||||| ||||| |
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| T |
2474271 |
cgttttgtgtttctccaaaccacctg |
2474246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
153 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga |
229 |
Q |
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|||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 2486576 - 2486520
Alignment:
| Q |
191 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctg |
247 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||| |
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| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctg |
2486520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 18016046 - 18015925
Alignment:
| Q |
126 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
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| Q |
226 |
gtgagtttctccaaacaacctg |
247 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18015946 |
gtgagtttctccaaacaacctg |
18015925 |
T |
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Back To:
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