View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_130 (Length: 247)
Name: NF8319A_low_130
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_130 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 31700739 - 31700972
Alignment:
| Q |
9 |
gatatgaagcctaataacgtttacaatcacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
108 |
Q |
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| T |
31700739 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
31700838 |
T |
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| Q |
109 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga |
208 |
Q |
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| T |
31700839 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtga |
31700938 |
T |
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| Q |
209 |
ccactatggtcta-ctggagtcaatggatactgc |
241 |
Q |
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| T |
31700939 |
ccactatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtcta-ctggagtcaatggata |
237 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 31716084 - 31716276
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31716084 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31716183 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtcta-ctggagtcaatggata |
237 |
Q |
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| T |
31716184 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31716276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 31721958 - 31722150
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31721958 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31722057 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtcta-ctggagtcaatggata |
237 |
Q |
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| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| ||||||| | ||||||||||||||| |
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| T |
31722058 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31722150 |
T |
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