View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_131 (Length: 246)
Name: NF8319A_low_131
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_131 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 50442045 - 50442266
Alignment:
| Q |
25 |
ttccttaagaaattgaatacatacagataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggagatataaagttgaaacagtgcaa |
124 |
Q |
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| T |
50442045 |
ttccttaagaaattgaatacatactgataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggcgatataaagttgaaacagtgcaa |
50442144 |
T |
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| Q |
125 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
224 |
Q |
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| T |
50442145 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
50442244 |
T |
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| Q |
225 |
ttagagaaatggatgtatactt |
246 |
Q |
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| T |
50442245 |
ttagagaaatggatgtatactt |
50442266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 50447057 - 50447167
Alignment:
| Q |
132 |
ttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagaga |
231 |
Q |
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| T |
50447057 |
ttacatgttgattattgtttgtgttaattctcagaagggatgg----taagaaactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaa |
50447152 |
T |
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| Q |
232 |
aatggatgtatactt |
246 |
Q |
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| T |
50447153 |
aatggatgcatactt |
50447167 |
T |
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