View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_135 (Length: 246)
Name: NF8319A_low_135
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_135 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 1831625 - 1831845
Alignment:
| Q |
6 |
gacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcacca |
105 |
Q |
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| T |
1831625 |
gacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgtttagtgatgcacca |
1831724 |
T |
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| Q |
106 |
gaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-accttaggtgtgtaaagaatgaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||| |
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| T |
1831725 |
gaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaa |
1831824 |
T |
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| Q |
205 |
gataaggagctagttgaccct |
225 |
Q |
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||| | ||||||||||||||| |
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| T |
1831825 |
gatgaagagctagttgaccct |
1831845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 15490585 - 15490418
Alignment:
| Q |
6 |
gacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcacca |
105 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |||| || |
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| T |
15490585 |
gacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttagggatgcatca |
15490486 |
T |
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| Q |
106 |
gaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
171 |
Q |
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| T |
15490485 |
gaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 16944216 - 16944109
Alignment:
| Q |
6 |
gacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcacca |
105 |
Q |
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|||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||| |
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| T |
16944216 |
gacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcacca |
16944117 |
T |
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| Q |
106 |
gaagaaat |
113 |
Q |
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|||||||| |
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| T |
16944116 |
gaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 17014881 - 17014774
Alignment:
| Q |
6 |
gacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcacca |
105 |
Q |
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|||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||| |
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| T |
17014881 |
gacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcacca |
17014782 |
T |
|
| Q |
106 |
gaagaaat |
113 |
Q |
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|||||||| |
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| T |
17014781 |
gaagaaat |
17014774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 9816938 - 9817073
Alignment:
| Q |
6 |
gacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcacca |
105 |
Q |
| |
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|||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| ||||| | |
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| T |
9816938 |
gacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgcacta |
9817037 |
T |
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| Q |
106 |
gaagaaatatgctacaaatattttaaagagattcaa |
141 |
Q |
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| T |
9817038 |
gaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
41 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
140 |
Q |
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|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
141 |
acatgatgggcttcaatcctgcatctacac |
170 |
Q |
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||||| || || ||||||||||||||||| |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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