View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_15 (Length: 435)
Name: NF8319A_low_15
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 4119818 - 4119639
Alignment:
| Q |
179 |
cagttaacatatctcagact-caaggaaactgaattctctgaccaacttagctgaatcgtctaaaatgtcacgacagagttgtcatgaatcgtcaaacgc |
277 |
Q |
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| T |
4119818 |
cagttgacatatctcaggcttcaaggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgc |
4119719 |
T |
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| Q |
278 |
cttttcctcgttcgcctgtgatgtttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
357 |
Q |
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| T |
4119718 |
cttttcctcgttcgcctgtgatgtttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 4119408 - 4119340
Alignment:
| Q |
356 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaaggtcatc |
424 |
Q |
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| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatc |
4119340 |
T |
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