View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_150 (Length: 243)
Name: NF8319A_low_150
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 28678278 - 28678469
Alignment:
| Q |
49 |
tacagagcaatggcaaagcatattaatgtgtgt--ataaaagcataaaaacatagtagaggaattggaacacttatatacttgtatcgagcatgtacaaa |
146 |
Q |
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| T |
28678278 |
tacagagcaatggcaaagcatattaatgtgtgtgtataaaagcataaaaacatagtagaggaattggaacacttatatacttgtatcgtggatgtacaaa |
28678377 |
T |
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| Q |
147 |
-ttgaatgaaaaataagcattagtcgaagaggattgatgaaaaatagttctggaaacacagatttgaattcatcaatttaataggtcaatgt |
237 |
Q |
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| T |
28678378 |
attgaatgaaaaataagcattagtcgaagaggattgatgaaaaatagttctggaaacacagatttgaattcataaatttaataggtcaatgt |
28678469 |
T |
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