View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_163 (Length: 237)
Name: NF8319A_low_163
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_163 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 23915345 - 23915210
Alignment:
| Q |
18 |
aatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgcctataa |
117 |
Q |
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| T |
23915345 |
aatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataa |
23915246 |
T |
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| Q |
118 |
attaagaaccctaagtaacgtctcttcttcattctcctca |
157 |
Q |
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| T |
23915245 |
attaagaaccc----taacgtctattctccattctcctca |
23915210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
159 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
219 |
Q |
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| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
159 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
217 |
Q |
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| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
94 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
157 |
Q |
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| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
167 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
219 |
Q |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 23923011 - 23922954
Alignment:
| Q |
18 |
aatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
75 |
Q |
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| T |
23923011 |
aatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
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