View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_165 (Length: 236)
Name: NF8319A_low_165
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_165 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4124018 - 4124246
Alignment:
| Q |
1 |
tgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124018 |
tgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
4124117 |
T |
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| Q |
101 |
tgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtggttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124118 |
tgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttg |
4124217 |
T |
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| Q |
201 |
atctctgtttgcaatccatatattattgg |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
4124218 |
atctctgtttgcaatccatatattgttgg |
4124246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4153368 - 4153596
Alignment:
| Q |
1 |
tgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
100 |
Q |
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| T |
4153368 |
tgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
4153467 |
T |
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| Q |
101 |
tgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtggttg |
200 |
Q |
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| T |
4153468 |
tgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttg |
4153567 |
T |
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| Q |
201 |
atctctgtttgcaatccatatattattgg |
229 |
Q |
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| T |
4153568 |
atctctgtttgcaatccatatattgttgg |
4153596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4134563 - 4134783
Alignment:
| Q |
1 |
tgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
4134563 |
tgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaa |
4134662 |
T |
|
| Q |
101 |
tgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtggttg |
200 |
Q |
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| T |
4134663 |
tgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttg |
4134762 |
T |
|
| Q |
201 |
atctctgtttgcaatccatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4134763 |
atctctgtttgcaatccatat |
4134783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4145365 - 4145585
Alignment:
| Q |
1 |
tgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
4145365 |
tgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaa |
4145464 |
T |
|
| Q |
101 |
tgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtggttg |
200 |
Q |
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||||||||||||| || || ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4145465 |
tgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttg |
4145564 |
T |
|
| Q |
201 |
atctctgtttgcaatccatat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4145565 |
atctctgtttgcaatccatat |
4145585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 4163724 - 4163955
Alignment:
| Q |
4 |
gtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa----ga--tg |
97 |
Q |
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|||||||||||||| ||||||| || |||| |||| || || | ||||||||||||| |||| ||||||||||||| |||||| ||||| || || |
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| T |
4163724 |
gtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
4163823 |
T |
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| Q |
98 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtgg |
197 |
Q |
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||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
4163824 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtgg |
4163923 |
T |
|
| Q |
198 |
ttgatctctgtttgcaatccatatattattgg |
229 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
4163924 |
ttgatctctgtttgcaatccatatattgttgg |
4163955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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