View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_17 (Length: 428)
Name: NF8319A_low_17
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 40821938 - 40821519
Alignment:
| Q |
8 |
aagaatattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnn |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821938 |
aagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaaga |
40821839 |
T |
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| Q |
108 |
nnnnntgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttag |
207 |
Q |
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| T |
40821838 |
aaag-tgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttag |
40821740 |
T |
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| Q |
208 |
actcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
307 |
Q |
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| T |
40821739 |
actcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
40821640 |
T |
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| Q |
308 |
gttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaagga |
407 |
Q |
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| T |
40821639 |
gttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaagga |
40821540 |
T |
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| Q |
408 |
caccgaaactcttatctccaa |
428 |
Q |
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| T |
40821539 |
cactgaaactcttatctccaa |
40821519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 130 - 428
Target Start/End: Original strand, 20292021 - 20292309
Alignment:
| Q |
130 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa |
226 |
Q |
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||||||||| |||||| ||| |||| ||||| |||| ||| |||| ||||| |||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
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| Q |
227 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc |
326 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc |
20292207 |
T |
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| Q |
327 |
tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc |
426 |
Q |
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| T |
20292208 |
tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc |
20292307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
| Q |
310 |
tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca |
409 |
Q |
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||||||||| || ||| |||| |||||||| |||||| ||||||||||| |||||||| | ||| || ||||||||||||||||| ||| |||||| |
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| T |
20301393 |
tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc |
20301492 |
T |
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| Q |
410 |
ccgaaactct |
419 |
Q |
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| T |
20301493 |
ctgaaactct |
20301502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 20064991 - 20064915
Alignment:
| Q |
332 |
tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggac |
408 |
Q |
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| T |
20064991 |
tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggac |
20064915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
242 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
317 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
| Q |
308 |
gttgttcaaatatgctctctgttctgttcattttgttttgctattt |
353 |
Q |
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| T |
135603 |
gttgttcaaatgtgttctctgttttgttaattttgttttgctattt |
135558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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