View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_170 (Length: 234)
Name: NF8319A_low_170
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_170 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 28529769 - 28529540
Alignment:
| Q |
11 |
catgtatgtgtcggtgcttcatag----atattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaag |
106 |
Q |
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| T |
28529769 |
catgcatgtgtcggtgcttcatagctagatattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaag |
28529670 |
T |
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| Q |
107 |
tgtttctgtcattctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaat--ttacaacnnnnnnnngtagcagg |
204 |
Q |
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| T |
28529669 |
tgtttctgtcattctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcagg |
28529570 |
T |
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| Q |
205 |
agagtactggcattttcatattgaaatatt |
234 |
Q |
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| T |
28529569 |
agagtactggcattttcatattgaaatatt |
28529540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 27926707 - 27926778
Alignment:
| Q |
39 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
110 |
Q |
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| T |
27926707 |
tgagaaattacctggagaagaatgttcaagagatacacaatatcagttatgcttctaagtacaacaagtgtt |
27926778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 28056486 - 28056415
Alignment:
| Q |
39 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
110 |
Q |
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| T |
28056486 |
tgagaaattacctggagaagaatgttcaagagatacacaacatcagttatgcttctaagtataactagtgtt |
28056415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 28087123 - 28087056
Alignment:
| Q |
43 |
aaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
110 |
Q |
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| T |
28087123 |
aaattacctggagaagaatgttcaagagatacacaacatcggttatgcttctaagtacaacaagtgtt |
28087056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 1435790 - 1435719
Alignment:
| Q |
39 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
110 |
Q |
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| T |
1435790 |
tgagaaattacctgaagaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgtt |
1435719 |
T |
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