View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_18 (Length: 419)
Name: NF8319A_low_18
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 27915288 - 27915071
Alignment:
| Q |
7 |
ctaaaattattaagaaaaatctgagtactagtatatgtcggtaactggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcg |
106 |
Q |
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| T |
27915288 |
ctaaaattattaagaaaaatctgagtactaacatatgtcggtaaatggtt--gtggttcatggtgcactttgtcagtgttcccacaatattgtaagatcg |
27915191 |
T |
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| Q |
107 |
agaaaaatggcaaccagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaa |
206 |
Q |
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| T |
27915190 |
aggaaaatggcaaccagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaattccggcccctatatagttaaccgttttattgaa |
27915091 |
T |
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| Q |
207 |
ttatacagtatatgttacta |
226 |
Q |
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| T |
27915090 |
ttataaaatatatgttacta |
27915071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 241 - 410
Target Start/End: Complemental strand, 27914817 - 27914648
Alignment:
| Q |
241 |
aaacacactttcattgtctgtttattgagtaggggtcggaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggatacttgca |
340 |
Q |
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| T |
27914817 |
aaacacacttttattgtctgtttagagagtaggggtctgaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggaaacttgca |
27914718 |
T |
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| Q |
341 |
tgaaagagtacttgattggccacttgcagatatatatactagattcttcgcacgatccaggtatattgtt |
410 |
Q |
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| T |
27914717 |
agaaagagtacgtgattggctacttgcagatatatatactagattcttcgcacgatccagctatattgtt |
27914648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 27909857 - 27909681
Alignment:
| Q |
52 |
tggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcgagaaaaatggcaaccagaaggaaaataatgattgataaattatga |
151 |
Q |
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| T |
27909857 |
tggttttgtggttcatgatgcactttgtctgtgttcccacgatattgtaagatcaaggaaaatggcaatcagaagggatataatgattgataaattatga |
27909758 |
T |
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| Q |
152 |
gtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatacagtatatgttactagt |
228 |
Q |
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| T |
27909757 |
gtgaatagaaatgtatgtcaattccggcccctatatagttaaccattttattgaattataaaatatatgttactagt |
27909681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 27907964 - 27907919
Alignment:
| Q |
363 |
cttgcagatatatatactagattcttcgcacgatccaggtatattg |
408 |
Q |
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| T |
27907964 |
cttgcagatatacatactagatccttcgcacgattcagctatattg |
27907919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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