View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_180 (Length: 230)
Name: NF8319A_low_180
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_180 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 87591 - 87814
Alignment:
| Q |
1 |
taatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtg |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
87591 |
taatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtg |
87690 |
T |
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| Q |
101 |
tctgaaactaaggataaacatcaatcttttgcgaaaacctcgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
200 |
Q |
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| T |
87691 |
tccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
87790 |
T |
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| Q |
201 |
cgctttttcctcgtttggactatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
87791 |
cgctttttcctcgtttggactatt |
87814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 95607 - 95830
Alignment:
| Q |
1 |
taatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtg |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
95607 |
taatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtg |
95706 |
T |
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| Q |
101 |
tctgaaactaaggataaacatcaatcttttgcgaaaacctcgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
200 |
Q |
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| T |
95707 |
tccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
95806 |
T |
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| Q |
201 |
cgctttttcctcgtttggactatt |
224 |
Q |
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| T |
95807 |
tgatttttcctcgtatggactatt |
95830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40878692 - 40878469
Alignment:
| Q |
1 |
taatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtg |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
40878692 |
taatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtg |
40878593 |
T |
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| Q |
101 |
tctgaaactaaggataaacatcaatcttttgcgaaaacctcgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
200 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878592 |
tccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
40878493 |
T |
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| Q |
201 |
cgctttttcctcgtttggactatt |
224 |
Q |
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| T |
40878492 |
cgctttttcctcgtttggactatt |
40878469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40870675 - 40870452
Alignment:
| Q |
1 |
taatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtg |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
40870675 |
taatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtg |
40870576 |
T |
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| Q |
101 |
tctgaaactaaggataaacatcaatcttttgcgaaaacctcgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
200 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870575 |
tccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaa |
40870476 |
T |
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| Q |
201 |
cgctttttcctcgtttggactatt |
224 |
Q |
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| T |
40870475 |
tgatttttcctcgtatggactatt |
40870452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
124 |
atcttttgcgaaaacctcgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
213 |
Q |
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||||||||| || || | |||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||||| |||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 28346750 - 28346823
Alignment:
| Q |
146 |
caatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
219 |
Q |
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||||||||||| ||||||||||| || |||||| |||||| |||||||| || ||| |||| ||||||||||| |
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| T |
28346750 |
caatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 42730158 - 42730239
Alignment:
| Q |
143 |
acacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
224 |
Q |
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|||||||||||||||||||| ||||| || |||||| ||||||||| ||||| || || |||||||| | ||||| |||| |
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| T |
42730158 |
acacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgctgagactatttttcctaggttggattatt |
42730239 |
T |
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