View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_194 (Length: 226)
Name: NF8319A_low_194
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_194 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 50222720 - 50222889
Alignment:
| Q |
51 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
150 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
151 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
220 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
50222889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50222590 - 50222640
Alignment:
| Q |
1 |
ttcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
51 |
Q |
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| T |
50222590 |
ttcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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