View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_196 (Length: 226)

Name: NF8319A_low_196
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_196
NF8319A_low_196
[»] chr5 (3 HSPs)
chr5 (46-182)||(35854545-35854681)
chr5 (48-163)||(10521323-10521438)
chr5 (109-182)||(35802504-35802577)
[»] chr4 (6 HSPs)
chr4 (50-152)||(54304257-54304359)
chr4 (46-158)||(45876742-45876854)
chr4 (46-158)||(55705908-55706020)
chr4 (46-152)||(47293489-47293595)
chr4 (52-157)||(45858817-45858922)
chr4 (52-158)||(56208543-56208649)
[»] chr8 (2 HSPs)
chr8 (21-170)||(7972057-7972206)
chr8 (48-152)||(7961714-7961818)
[»] chr2 (1 HSPs)
chr2 (52-152)||(24357488-24357588)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 35854681 - 35854545
Alignment:
Q  46 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 145  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg 35854582  T
Q  146 gtccaaagcctcctatgttcaacctttttcgtcttgt 182  Q
    ||||||| ||||| |||| ||||||||||| ||||||    
T  35854581 gtccaaatcctcccatgtgcaacctttttcatcttgt 35854545  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 10521438 - 10521323
Alignment:
Q  48 tgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggt 147  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |    
T  10521438 tgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgat 10521339  T
Q  148 ccaaagcctcctatgt 163  Q
    ||||| ||||||||||    
T  10521338 ccaaatcctcctatgt 10521323  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 35802504 - 35802577
Alignment:
Q  109 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35802577  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q  50 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc 149  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  150 aaa 152  Q
    |||    
T  54304259 aaa 54304257  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q  46 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 145  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg 45876841  T
Q  146 gtccaaagcctcc 158  Q
    ||||||| |||||    
T  45876842 gtccaaaccctcc 45876854  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 55706020 - 55705908
Alignment:
Q  46 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 145  Q
    |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  55706020 tctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccg 55705921  T
Q  146 gtccaaagcctcc 158  Q
    ||||||| |||||    
T  55705920 gtccaaaccctcc 55705908  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q  46 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 145  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  ||||||||||||||||||||||||||||||  ||||||||||| |    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg 47293496  T
Q  146 gtccaaa 152  Q
    |||||||    
T  47293495 gtccaaa 47293489  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 151  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  152 agcctc 157  Q
    | ||||    
T  45858917 accctc 45858922  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 56208543 - 56208649
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 151  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  ||| || ||||||||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  152 agcctcc 158  Q
    | |||||    
T  56208643 accctcc 56208649  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 7972057 - 7972206
Alignment:
Q  21 atgagagctccacaataccatcttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 120  Q
    |||||||||||||||||  | | | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  121 accatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacct 170  Q
    ||||| ||||  ||| || ||||||||||||| |||||| ||| ||||||    
T  7972157 accattagatactgcatctttaccggtccaaatcctcctctgtgcaacct 7972206  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 7961714 - 7961818
Alignment:
Q  48 tgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggt 147  Q
    |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| |||||| ||| |||| |||| || ||||| ||    
T  7961714 tgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagt 7961813  T
Q  148 ccaaa 152  Q
    |||||    
T  7961814 ccaaa 7961818  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 151  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  152 a 152  Q
    |    
T  24357488 a 24357488  T

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