View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319A_low_197 (Length: 226)
Name: NF8319A_low_197
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_197 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43239055 - 43238834
Alignment:
| Q |
1 |
aaaagttaaaacataatttaactgagaata-gagtaatatacctttgacaatagtatgagcagtggaaagatcataagaatcatttgagatattcttgtc |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43239055 |
aaaagttaaaacataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttgtc |
43238956 |
T |
|
| Q |
100 |
ttcttgaccatgtcctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaa |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43238955 |
ttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaa |
43238856 |
T |
|
| Q |
200 |
cgcaaga-tttggtacacatat |
220 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
43238855 |
cgcaagagtttggtacacatat |
43238834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University