View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_199 (Length: 225)

Name: NF8319A_low_199
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_199
NF8319A_low_199
[»] chr6 (10 HSPs)
chr6 (47-210)||(26975562-26975725)
chr6 (51-210)||(26636257-26636416)
chr6 (51-210)||(26742223-26742382)
chr6 (47-210)||(26950354-26950517)
chr6 (47-207)||(26849326-26849486)
chr6 (47-210)||(27664613-27664776)
chr6 (47-210)||(26959737-26959900)
chr6 (50-210)||(25074481-25074638)
chr6 (140-207)||(31288919-31288986)
chr6 (47-103)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (50-200)||(17992626-17992776)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 26975725 - 26975562
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  147 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtc 26975562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 26636416 - 26636257
Alignment:
Q  51 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 150  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636416 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26636317  T
Q  151 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636316 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 26636257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 26742382 - 26742223
Alignment:
Q  51 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 150  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742382 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26742283  T
Q  151 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742282 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 26742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 26950517 - 26950354
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 146  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  147 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 26950354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 26849486 - 26849326
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 146  Q
    |||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  26849486 agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag 26849387  T
Q  147 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagac 207  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| ||||||    
T  26849386 atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagac 26849326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 27664613 - 27664776
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 146  Q
    ||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  147 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtc 27664776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 26959900 - 26959737
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 146  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  147 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||||||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtc 26959737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 25074638 - 25074481
Alignment:
Q  50 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 149  Q
    |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  150 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 210  Q
      || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||    
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtc 25074481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 31288986 - 31288919
Alignment:
Q  140 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagac 207  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagac 31288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  47 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 103  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 17992626 - 17992776
Alignment:
Q  50 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 149  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  150 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgt 200  Q
    |||| ||||  |||||||| ||||||||||  ||||||||||| |||||||    
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgt 17992776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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