View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_202 (Length: 225)
Name: NF8319A_low_202
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_202 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 32894508 - 32894689
Alignment:
| Q |
20 |
gcatatgtaagcatgatataatattctcttgttagttagatataaataattcttcattgagacaatctttgcaaactctcttataaagtgtgaactaatt |
119 |
Q |
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| T |
32894508 |
gcatatgtaagcaggatataatattctcttgttagttagatataaataattcttcactgagacaatctttgcaaactctcttataaagtgtgaactgatt |
32894607 |
T |
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| Q |
120 |
gattaaagttacttaattgttatattgtatgagcacttactaagttctttattacatgaatgcaatgaattgagttaagtat |
201 |
Q |
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| T |
32894608 |
gattaaagttacttaattgttatattgtatgagcacttactaagttctttatcacatgaatgcaatgaattgagttaagtat |
32894689 |
T |
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Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 27076641 - 27076822
Alignment:
| Q |
20 |
gcatatgtaagcatgatataatattctcttgttagttagatataaataattcttcattgagacaatctttgcaaactctcttataaagtgtgaactaatt |
119 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
27076641 |
gcatatgtaagcaggatataatattctcttgttagttagatataaataattcttcactgagacaatctttgcaaactctgttataaagtgtgaactgatt |
27076740 |
T |
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| Q |
120 |
gattaaagttacttaattgttatattgtatgagcacttactaagttctttattacatgaatgcaatgaattgagttaagtat |
201 |
Q |
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| T |
27076741 |
gattaaagttacttaattgttatattgtatgagcacttactaagttctttattacatgaatgcaatgaatttagttaagtat |
27076822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 26051738 - 26051919
Alignment:
| Q |
20 |
gcatatgtaagcatgatataatattctcttgttagttagatataaataattcttcattgagacaatctttgcaaactctcttataaagtgtgaactaatt |
119 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26051738 |
gcatatgtaagcaggatataatattctcttgttagttagatataaataattcttcactgagacaatctttgcaaactctcttataaagtgtgaactgatt |
26051837 |
T |
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| Q |
120 |
gattaaagttacttaattgttatattgtatgagcacttactaagttctttattacatgaatgcaatgaattgagttaagtat |
201 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26051838 |
gattaaagttacttaatttttatattgtatgagtacttactaagttctttattacatgaatgcaatgaattaagttaagtat |
26051919 |
T |
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