View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_205 (Length: 224)
Name: NF8319A_low_205
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_205 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 1571862 - 1572054
Alignment:
| Q |
16 |
atgaatgatacatgtgggaaccttgaataaataatatttgtgggagcattttaattaattataatactaaaattgtcttgatatctttattatttgtcga |
115 |
Q |
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| T |
1571862 |
atgaatgatacatgtgggagctttgaataaataatacttgtgggagcattttagttaattataatactaaaattgtcttgatatctttattatttgtcga |
1571961 |
T |
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| Q |
116 |
tgaatgatctttggtagaatcaattcataccctaaaaattgtagatttaactctcgctatcggtccctataagcactcttttagctttgatgt |
208 |
Q |
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| T |
1571962 |
tgaatgttctttggtagaatcaattcataccccaaaaattgtagatttaactctcgctatcagttcctataagcactcttttagctttgatgt |
1572054 |
T |
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