View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_209 (Length: 222)

Name: NF8319A_low_209
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_209
NF8319A_low_209
[»] chr2 (3 HSPs)
chr2 (1-222)||(17049742-17049963)
chr2 (23-222)||(16979531-16979730)
chr2 (23-222)||(17031403-17031602)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17049963 - 17049742
Alignment:
Q  1 agcacttcaccacaannnnnnnggtgtcccgttcttcgcataaaattcctgcgagcttccataataatagaggaattagaagaaaaagatttagatatga 100  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  17049963 agcacttcaccacaatttttttggtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatga 17049864  T
Q  101 tagagataaagggtgatgataatatgaatatcgaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17049863 tagaaataaagggtgatgataatatgaatatcgaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactac 17049764  T
Q  201 tgataatccagcgagttacgag 222  Q
    ||||||||||||||||||||||    
T  17049763 tgataatccagcgagttacgag 17049742  T

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Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 16979730 - 16979531
Alignment:
Q  23 ggtgtcccgttcttcgcataaaattcctgcgagcttccataataatagaggaattagaagaaaaagatttagatatgatagagataaagggtgatgataa 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  16979730 ggtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatgatagaaataaagggtgatgataa 16979631  T
Q  123 tatgaatatcgaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactactgataatccagcgagttacgag 222  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16979630 tatgaatatgaaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactactgataatccagcgagttacgag 16979531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 17031602 - 17031403
Alignment:
Q  23 ggtgtcccgttcttcgcataaaattcctgcgagcttccataataatagaggaattagaagaaaaagatttagatatgatagagataaagggtgatgataa 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  17031602 ggtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatgatagaaataaagggtgatgataa 17031503  T
Q  123 tatgaatatcgaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactactgataatccagcgagttacgag 222  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17031502 tatgaatatgaaaggtttgcggaggatttcattaggaagtttgagaagttgaaagattcttactttgtcatgtactactgataatccagcgagttacgag 17031403  T

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