View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_22 (Length: 393)

Name: NF8319A_low_22
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_22
NF8319A_low_22
[»] chr7 (2 HSPs)
chr7 (6-393)||(7237978-7238365)
chr7 (139-215)||(1826295-1826372)
[»] chr8 (5 HSPs)
chr8 (176-250)||(29565815-29565889)
chr8 (335-387)||(22531432-22531484)
chr8 (335-387)||(22536117-22536169)
chr8 (344-387)||(25994038-25994081)
chr8 (182-215)||(33994999-33995032)
[»] chr6 (1 HSPs)
chr6 (335-387)||(33091079-33091131)
[»] chr5 (1 HSPs)
chr5 (338-387)||(13191863-13191912)
[»] chr3 (2 HSPs)
chr3 (338-387)||(49368515-49368564)
chr3 (338-387)||(20983186-20983235)
[»] chr1 (2 HSPs)
chr1 (338-387)||(30190940-30190989)
chr1 (338-382)||(31991778-31991822)
[»] scaffold0097 (1 HSPs)
scaffold0097 (335-387)||(21569-21621)
[»] chr2 (2 HSPs)
chr2 (335-387)||(20717732-20717784)
chr2 (181-222)||(17334526-17334567)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 7238365 - 7237978
Alignment:
Q  6 aaggggtatatgagatgaatagatggagtgcaactattaaaggttgtgtaactctatgtgtgcctttatgaacgaattgtggtaaataagagtgcaagta 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238365 aaggggtatatgggatgaatagatggagtgcaactattaaaggttgtgtaactctatgtgtgcctttatgaacgaattgtggtaaataagagtgcaagta 7238266  T
Q  106 atgagtataagatatgaatatacaggcgtgcaattgataacacacaaagtacattatctaaaaagcttattttcgtttgttttagagtcatttgtcgtgt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238265 atgagtataagatatgaatatacaggcgtgcaattgataacacacaaagtacattatctaaaaagcttattttcgtttgttttagagtcatttgtcgtgt 7238166  T
Q  206 tttgcatggtgtctgctgatgttttgtttacatttcaggtacttgggtgttagacgccaaaaataggaggaaagaagacgccaagagatcttgacggtca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||    
T  7238165 tttgcatggtgtctgctgatgttttgtttacatttcaggtacttgggtgttagacgccaaaaatgggaggaaagaagacgccaagaggtcttgatggtca 7238066  T
Q  306 caagcacaaaggtaacgagcgtcaccggtctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatgg 393  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  7238065 caagcacaaaggtaacgagcgtcaccagtctaaggctctgtttggattgatgggttgtagtggaatggaatggaatggaatgtgatgg 7237978  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 1826295 - 1826372
Alignment:
Q  139 ttgataacacacaaagtacattatctaaaaagctt-attttcgtttgttttagagtcatttgtcgtgttttgcatggt 215  Q
    ||||||||||||||| |||||| |||||| ||||| || | | ||||||||||||||| || | |||| |||||||||    
T  1826295 ttgataacacacaaaatacattgtctaaatagcttgatatccatttgttttagagtcaattattgtgtcttgcatggt 1826372  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 29565815 - 29565889
Alignment:
Q  176 tttcgtttgttttagagtcatttgtcgtgttttgcatggtgtctgctgatgttttgtttacatttcaggtacttg 250  Q
    |||| |||||||||||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||||||    
T  29565815 tttcatttgttttagagtcatttgtcgcgttttacatggtgtatgttggtgttttgtttacatttcaggtacttg 29565889  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 22531484 - 22531432
Alignment:
Q  335 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  22531484 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 22531432  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 22536169 - 22536117
Alignment:
Q  335 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  22536169 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 22536117  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 25994081 - 25994038
Alignment:
Q  344 tgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  25994081 tgtttggattgatgggttgtagtggaatggaatggaatgagatg 25994038  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 33995032 - 33994999
Alignment:
Q  182 ttgttttagagtcatttgtcgtgttttgcatggt 215  Q
    ||||||||||| ||||||||||||||||||||||    
T  33995032 ttgttttagagccatttgtcgtgttttgcatggt 33994999  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 33091079 - 33091131
Alignment:
Q  335 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  33091079 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 33091131  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 13191912 - 13191863
Alignment:
Q  338 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  13191912 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 13191863  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 49368564 - 49368515
Alignment:
Q  338 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  49368564 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 49368515  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 20983186 - 20983235
Alignment:
Q  338 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  20983186 aggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg 20983235  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 30190989 - 30190940
Alignment:
Q  338 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  30190989 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg 30190940  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 31991822 - 31991778
Alignment:
Q  338 aggctctgtttagattgatgggttgtagtggaatggaatggaatg 382  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  31991822 aggctctgtttggattgatgggttgtagtggaatggaatggaatg 31991778  T

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Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 21621 - 21569
Alignment:
Q  335 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  21621 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg 21569  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 20717784 - 20717732
Alignment:
Q  335 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatg 387  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  20717784 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg 20717732  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 17334567 - 17334526
Alignment:
Q  181 tttgttttagagtcatttgtcgtgttttgcatggtgtctgct 222  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  17334567 tttgttttggggtcatttgtcgtgttttgcatggtatctgct 17334526  T

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