View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_221 (Length: 212)
Name: NF8319A_low_221
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_221 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 41621452 - 41621592
Alignment:
| Q |
30 |
atattaagtatgaagtaacgaagaatgttgaaaaggaaaaaattcttttacctttagtgctcattgtaacaataagtggagaaagaaagatgatcatatc |
129 |
Q |
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| T |
41621452 |
atattaagtacgaagtaacgaaaaatgttgaaaaggaaaaaattgttttacctctcatgctcattgtaacaataagtggagaaataaagatgatcatatc |
41621551 |
T |
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| Q |
130 |
aaaaacattttttgttagtggattcatgtttgttcctctgt |
170 |
Q |
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| T |
41621552 |
aaaaatattttttgttattggagtcatgtttgttcctctgt |
41621592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 41619220 - 41619259
Alignment:
| Q |
17 |
ataaaatgttaatatattaagtatgaagtaacgaagaatg |
56 |
Q |
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| T |
41619220 |
ataaaatgttaatatattaagtatgaagtaacgaagaatg |
41619259 |
T |
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