View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_226 (Length: 210)
Name: NF8319A_low_226
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_226 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 48993699 - 48993496
Alignment:
| Q |
1 |
ttttcaaccaaaaaattcaacttagcagccaacacaacaactccaattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttt |
100 |
Q |
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| T |
48993699 |
ttttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttt |
48993600 |
T |
|
| Q |
101 |
taattccaagtgttgattcatttggtccttcagctagcataccccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatc |
200 |
Q |
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| T |
48993599 |
taattccaagtgttgattcatttggtccttcagctagcataccccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatc |
48993500 |
T |
|
| Q |
201 |
tgtc |
204 |
Q |
| |
|
|||| |
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| T |
48993499 |
tgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 22624084 - 22624233
Alignment:
| Q |
54 |
aacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagtata |
153 |
Q |
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|||||| ||||||| ||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||||||||| |||| |
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| T |
22624084 |
aacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccctaatata |
22624183 |
T |
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| Q |
154 |
agcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
203 |
Q |
| |
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||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624184 |
agcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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