View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_232 (Length: 208)
Name: NF8319A_low_232
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_232 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42534140 - 42534347
Alignment:
| Q |
1 |
aattgatgaaagcttcagacaacaacgtcatttgatatgtgtgatttgtagtatcaaagtattttaaattgttgatttaaaatacttgacaattccgttc |
100 |
Q |
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| T |
42534140 |
aattgatgaaagtttcagacaacaacgtcatttgatatgtgtgatttgtagtatcaaagtattttaaattgttgatttaaaatacttgacaattccgttt |
42534239 |
T |
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| Q |
101 |
agttattttaaattatttcaagctaggcttttctaaaagtttgtttgtttgagtgacaaaataaaaagtgatgaaacttttcagttgagaaggttgtgtt |
200 |
Q |
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| T |
42534240 |
agttattttaaattatttcaagctaggattttctaagagtttgtttgtttgagtgacaaaataaaaagtgatgaaacttttcagctgagaaggttgtgtt |
42534339 |
T |
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| Q |
201 |
gggattaa |
208 |
Q |
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| T |
42534340 |
gggattaa |
42534347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 42527640 - 42527772
Alignment:
| Q |
80 |
aaatacttgacaatt----ccgttcagttattttaaattatttcaagctaggcttttctaaaagtttgtttgtttgagtgacaaaataaaaagtgatgaa |
175 |
Q |
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| T |
42527640 |
aaatacttgacaatttaaaccgttaggttattttaaattatttcaagctagggttttctaaaagtttgtttgtttgcgtgacaaagtaaaaagtgatgaa |
42527739 |
T |
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| Q |
176 |
acttttcagttgagaaggttgtgttgggattaa |
208 |
Q |
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| T |
42527740 |
acttttcagttgggcaggttgtgctgggattaa |
42527772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 55576339 - 55576226
Alignment:
| Q |
96 |
cgttcagttattttaaattatttcaagctaggcttttctaaaagtttgtttgtttgagtgacaaaataaaaagtgatgaaacttt-tcagttgagaaggt |
194 |
Q |
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| T |
55576339 |
cgttcaattattttcaactatttcaagctaaggttatgtacaagtttgtttgtttaagtagcaaaataaaaagtggtgaaactttatcaattgagaaggt |
55576240 |
T |
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| Q |
195 |
tgtgttgggattaa |
208 |
Q |
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| T |
55576239 |
tgtgttggaattaa |
55576226 |
T |
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