View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_24 (Length: 388)
Name: NF8319A_low_24
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_24 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 211 - 388
Target Start/End: Complemental strand, 149871 - 149694
Alignment:
| Q |
211 |
gtgaaggtagaagcttccattgtccactatatcttggtctttttgtggttaaggatgtttcaaattgggtttcaaaaggtgaagaacttgcaccaccact |
310 |
Q |
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| T |
149871 |
gtgaaggtagaagcttccattgtccactatatcttggtctttttgtggttaaggatgtttcaaattgggtttcaaaaggtgaagaacttgcaccaccact |
149772 |
T |
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| Q |
311 |
tgaaacatataatggagttgaaataaaagggtttgttccacttccacttacaacaatttgttgtgatgatgatgattg |
388 |
Q |
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| T |
149771 |
tgaaacatataatggagttgaaataaaagggtttgttccacttccacttacaacaatttgttgtgatgatgatgattg |
149694 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 150062 - 149988
Alignment:
| Q |
20 |
atttccttcttgacaaggcattggtgaatgatcatgagattgtgatgaagttgtctctgatgaagaagcagctaa |
94 |
Q |
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| T |
150062 |
atttccttcttgacaaggcattggtgaatgatcatgagattgtgatgaagttgtctctgatgaagaagcagctaa |
149988 |
T |
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