View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_26 (Length: 385)
Name: NF8319A_low_26
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 50441662 - 50442030
Alignment:
| Q |
1 |
aacctgaatgaatctgttccatcttgcaatttgcgttgtgcagtatcataggaattccttgcttgttctacaagaaaccacatttcttagtgagcaagca |
100 |
Q |
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| T |
50441662 |
aacctgaatgaatctgttccatcttgcaatttgcgttgtgcagcatcataggaattccttgcttgttctacaagaaaccacatttcttagtgagcaagca |
50441761 |
T |
|
| Q |
101 |
acatggtgatattacacataatagaactagatgtgtgaaggtgtatgaatctaacctttttcactttgctccaacaccaaatttatgtctgattggtctt |
200 |
Q |
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| T |
50441762 |
acatggtgatattacacataatagaactagatgtgtaaaggtgtatgaatctaacctttttcactttgctccaacaccaaatttatgtctgattggtctt |
50441861 |
T |
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| Q |
201 |
gttcgatagtagtttgactaacttgtaggggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagac |
300 |
Q |
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| T |
50441862 |
gttcgatagtagtttgactaacttgtagaggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagac |
50441961 |
T |
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| Q |
301 |
tgtacaaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgatatg |
369 |
Q |
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| T |
50441962 |
tgtacaaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgatatg |
50442030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 190 - 366
Target Start/End: Original strand, 50421700 - 50421876
Alignment:
| Q |
190 |
tgattggtcttgttcgatagtagtttgactaacttgtaggggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgcca |
289 |
Q |
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| T |
50421700 |
tgattggtatagttcgatggtagtttggttaacttgcagaggggaaatgtttggagcaggacgagaggcagatcgcatcgattgaatctttcctttatta |
50421799 |
T |
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| Q |
290 |
atgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgat |
366 |
Q |
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| T |
50421800 |
atgacataaactgtgcaaaaatttggtgccatttttgacactgttccaggaatatcgaataccttgaatcttctgat |
50421876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 50446857 - 50447019
Alignment:
| Q |
205 |
gatagtagtttgactaacttgtaggggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgta |
304 |
Q |
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||||||||||| | | ||||||| |||||||| || ||| ||| || |||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
50446857 |
gatagtagtttaattggcttgtagaggggaaatttttggaacagaactagaagcaggtcgcattgattgaatctttccattgccaatgacatagactgta |
50446956 |
T |
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| Q |
305 |
caaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgata |
367 |
Q |
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| T |
50446957 |
cagaaatctggtgccccttttgacaccgttccagaaatatctgttgccttgaatattctgata |
50447019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 50446756 - 50446841
Alignment:
| Q |
52 |
gaattccttgcttgttctacaagaaaccacatttcttagtgagcaagcaacatggtgatattacacataatagaactagatgtgtg |
137 |
Q |
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| T |
50446756 |
gaatacctttcttgttctaaaataaatcacatttctttgtgagcaataaacattttgatattacacataatagaactagatttgtg |
50446841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 367
Target Start/End: Complemental strand, 1271277 - 1271152
Alignment:
| Q |
242 |
ggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaa |
341 |
Q |
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||||||| ||||||||| |||||||| |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| | |||| | |||| |
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| T |
1271277 |
ggagcagcacgagaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttgatattgttgctggaa |
1271178 |
T |
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| Q |
342 |
tatctgataccttgaatcttctgata |
367 |
Q |
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||||| |||||||| ||||||||| |
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| T |
1271177 |
tatctaccaccttgaaccttctgata |
1271152 |
T |
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