View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_3 (Length: 656)
Name: NF8319A_low_3
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 102 - 369
Target Start/End: Complemental strand, 39322446 - 39322174
Alignment:
| Q |
102 |
tttgtacactgaccataatatgtgactgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggaaattg |
201 |
Q |
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| T |
39322446 |
tttgtacactgaccataatatgtgaatgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggaaattg |
39322347 |
T |
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| Q |
202 |
tttatcaactattattaaactcaactaaattatcaacctagctagtgcatatt------ttaagtttattttacaattgaaacaagtcatcgttgccacc |
295 |
Q |
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| T |
39322346 |
tttatcaactattattaaactcaactaaattatcaacctagctagtgcatattttaattttaagtttattatacaattgaaacaagtcatcgttgccacc |
39322247 |
T |
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| Q |
296 |
aacaactaatgctacattcaagccgtaaacaaatagaaggnnnnnnnncacctttcagaatataattttgaaag |
369 |
Q |
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| T |
39322246 |
aacaactaatgctacattcaagcagtaaacaaatagaagg-aaaaaaacacctttcagaatataattttgaaag |
39322174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 422 - 616
Target Start/End: Complemental strand, 39321879 - 39321685
Alignment:
| Q |
422 |
tatgaatcaaacttttcttatccttggatcaaattttaaattacaaaagccgaatcgaagggataacaaaaatgttgagaagaaggaagacaaccaatgt |
521 |
Q |
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| T |
39321879 |
tatgaatcaaatttttcttatccttggatcaaattttaaattacaaaagccgaatcgaagggataacaaaaatgttgagaagaaggaagacaaccaatgt |
39321780 |
T |
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| Q |
522 |
aacattttgaacagaatatctgaatggtgcgctaactagctatttcaatgataaatgtttgtctttttcaagatgtcatgttaagaagtccatga |
616 |
Q |
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| T |
39321779 |
aactttttgaacagactatctgaatggtgcgctaactagctatttcaatgataaatgtttgtctttttcaagatgtcatgttaagaagtccatga |
39321685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 39322492 - 39322444
Alignment:
| Q |
31 |
acctgtgtgccatcctggaactttacttttgcatatttgtaaattattt |
79 |
Q |
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| T |
39322492 |
acctgtgtgccatcctggaactttacttttgcttatttgtaaattattt |
39322444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 647
Target Start/End: Complemental strand, 39321654 - 39321624
Alignment:
| Q |
617 |
caaagaagaggtcaatgtagataatactata |
647 |
Q |
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| T |
39321654 |
caaagaagaggtcaatgtagataatactata |
39321624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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