View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_35 (Length: 366)
Name: NF8319A_low_35
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 56 - 360
Target Start/End: Original strand, 3272113 - 3272419
Alignment:
| Q |
56 |
ccattaatcaagtgattttgctcaaatggttaatgagctctctagaattaatcgttcaggaaaaactaagttcgatttctagtaaaaataattattggtc |
155 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3272113 |
ccattaatcaagtgattttgttcaaatggttaatgagctctctagaattaatcgttcaggaaaaactaagttcgattcctagtagaaataattattggtc |
3272212 |
T |
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| Q |
156 |
agactttatttaccttctaaccgaaccggattgctagggcctctttccctaaaaaccggagggttaacacaa--annnnnnnnnnnnngacaaacagtgt |
253 |
Q |
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| T |
3272213 |
agactttatttaccttctaaccgaaccggattgctagggcctcttcccctaaaaaccggagggttaacacaattttttttttttttttgacaaacagtgt |
3272312 |
T |
|
| Q |
254 |
ggtttcatgttttttacatcatataacagcaatttcacaagcaatgtggttagatagattgttcaaaagaaagcattttctttgaagggagttttacatt |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3272313 |
ggtttcatgttttttacatcatataacagcaatttcacaagcaatgtggttagatagattgttcaaaagaaaccattttctttgaagggagttttacatt |
3272412 |
T |
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| Q |
354 |
ctgtttt |
360 |
Q |
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||||||| |
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| T |
3272413 |
ctgtttt |
3272419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3271995 - 3272028
Alignment:
| Q |
1 |
aaaacaatactgcaaggtgaattacatatcttgt |
34 |
Q |
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| T |
3271995 |
aaaacaatattgcaaggtgaattacatatcttgt |
3272028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 46476900 - 46476972
Alignment:
| Q |
61 |
aatcaagtgattttgctcaaatggttaatgagctc-tctagaattaatcgttcaggaaaaactaagttcgattt |
133 |
Q |
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| T |
46476900 |
aatcaagtgattgagctcaa-tggttaatgagctcctctagaacgaatcgttcaggagaaacaaagttcgattt |
46476972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 577417 - 577465
Alignment:
| Q |
124 |
agttcgatttctagtaaaaataattattggtcagactttatttaccttc |
172 |
Q |
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||||||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
577417 |
agttcgattcgtagtgaaaataattattggtcagattttacttaccttc |
577465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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