View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_36 (Length: 365)
Name: NF8319A_low_36
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 20486894 - 20487240
Alignment:
| Q |
13 |
aatatggtatgaaagactgtcattaatctcatgttaatatattgtctaatgaaagacgttgtcattactaataaattctatgatgttttgacaagttata |
112 |
Q |
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| T |
20486894 |
aatatggtatgaaagattgtcattaatcccatgttaatatattgtctaatgaaagacgttgtcattactaataaattctatgatgttttgacaggctata |
20486993 |
T |
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| Q |
113 |
cctttgaaatgctagaaggatccatatatgttggcactctcaacgtttgcgaatgatccttaagtcaacgctgcactgactttctagttgctgaagatgg |
212 |
Q |
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| T |
20486994 |
cctctgaaacgctagaaggatccatatatgttggcactcccaacgtttgcgaaagatccttaagtcaaggctgcactgactttctggttgctgaagatgg |
20487093 |
T |
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| Q |
213 |
cggttgtttcatattgttgagactctttccagacctccaatgcatacaatagacattgtcctgactgggggaagataatttttcaatggtaatggtcata |
312 |
Q |
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| T |
20487094 |
tggttgtttcatattgttgagactctttccagacctccaatgcatacaatagacattgtcctgactgagggaagataatttttcaatggtaatggtcata |
20487193 |
T |
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| Q |
313 |
ttatcccactggacgtgtcaaatttgtcaatggaagcgtgaacttta |
359 |
Q |
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| T |
20487194 |
ttgtcccactggacatgtcaaatttgtcaatggaagcgtgaatttta |
20487240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 21770729 - 21770689
Alignment:
| Q |
42 |
catgttaatatattgtctaatgaaagacgttgtcattacta |
82 |
Q |
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| T |
21770729 |
catgtcaatatgatgtctaatgaaagacgttgtcattacta |
21770689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 9510195 - 9510135
Alignment:
| Q |
189 |
tgactttctagttgctgaagatggcggttgtttcatattgttgagactctttccagacctc |
249 |
Q |
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| T |
9510195 |
tgaccttctagttgttgatgatgaaggttgattcatactgttgagactctttccaaacctc |
9510135 |
T |
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