View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_41 (Length: 356)
Name: NF8319A_low_41
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 29323585 - 29323913
Alignment:
| Q |
3 |
ataactttttccat-tataatattt-aattaaaacattttatcactaacaacttctctagtgtatgacgcttattttaaaagttgtatataattattatt |
100 |
Q |
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| T |
29323585 |
ataacttttttcatgtataatattttaattaaaacctttgatcactaacaacttctctagtgtatgacacttattttaaaagttgtatataattattatt |
29323684 |
T |
|
| Q |
101 |
tcataatatgtatcagcgataacttgtcccgtataagataattattttaaaatttatatcaatacaaactgacccgtttaatataatcaagcccaatacg |
200 |
Q |
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| T |
29323685 |
tcataatatgtatcaacgataacttgtcccatgtaagataattattttaaaatttatatcaatacaaaatgactcgtt-----taatcaagcccaatacg |
29323779 |
T |
|
| Q |
201 |
tctcatctcgtgtatattgttatcaactcatataattgaagcaatgttctgtcaatttatatttgaagcaatgtgataaccgaagagggttcaatttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
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| T |
29323780 |
tctcatctcgtgtatattgttatcaactcatataattgaagcaatgttctgtcagtttatatttgaagcaatgtgataaccgaagagggttcaatattat |
29323879 |
T |
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| Q |
301 |
tgtaca----aagcaatatgatagtctaaatagt |
330 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
29323880 |
tgtacaattgaagcaatatgatagtctaaatagt |
29323913 |
T |
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