View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_5 (Length: 598)
Name: NF8319A_low_5
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 4 - 591
Target Start/End: Complemental strand, 40557177 - 40556590
Alignment:
| Q |
4 |
atcttcttcctcccttttttctgttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctattggaatggaca |
103 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40557177 |
atcttcttcctcccttttttattttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctattggaatggaca |
40557078 |
T |
|
| Q |
104 |
agcggctttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaacctcccatttgttccatcttttctttaaacac |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
40557077 |
agcggctttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaaccttccatttgttcaatcttttctttaaacgc |
40556978 |
T |
|
| Q |
204 |
caatggaagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctccttt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556977 |
caatggaagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctccttt |
40556878 |
T |
|
| Q |
304 |
ttggaaccttcattggatgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttc |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556877 |
ttggaaccttcattggatgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttc |
40556778 |
T |
|
| Q |
404 |
ttgtcctgataagttttttcccaaccccctcatcgcgtctacaatcagcaaccccgcgattctttgattcaagcatggcatatttaagactgctaaaatc |
503 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
40556777 |
ttgtcttgataagttttttcccaacaccctcatcgcgtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaagaatgctaaaatc |
40556678 |
T |
|
| Q |
504 |
tcttgtcgctgattgtttccttcnnnnnnncttggttattattttgtcaaaaccttcattgcatccacaaacaacgtcctcattattc |
591 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
40556677 |
tcttgtcgctgattggttccttctttttttcttggttattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattc |
40556590 |
T |
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