View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_52 (Length: 335)
Name: NF8319A_low_52
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 36170700 - 36170376
Alignment:
| Q |
5 |
aatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttcctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170700 |
aatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttcctt |
36170601 |
T |
|
| Q |
105 |
tgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccgtttgcctaaccaactcatctccaaag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36170600 |
tgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccatttgcctaaccaactcatctccaaag |
36170501 |
T |
|
| Q |
205 |
gcaatattctgaatgaaccctattgaattcacccgaattgcttcctcctttgatctcactagcctgataaaagtcgacaccgcatcctcctcaaccataa |
304 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36170500 |
gcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttgatttcactagcctgataaaagtcgacaccgcatcctcctcaaccatga |
36170401 |
T |
|
| Q |
305 |
atctcttaacttcctcaacaccaac |
329 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
36170400 |
atctcttaacttcctcaacaccaac |
36170376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1286342 - 1286394
Alignment:
| Q |
5 |
aatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286342 |
aatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
1286394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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