View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_56 (Length: 327)
Name: NF8319A_low_56
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5826971 - 5827291
Alignment:
| Q |
1 |
actagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826971 |
actagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
5827070 |
T |
|
| Q |
101 |
gccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5827071 |
gccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccag |
5827170 |
T |
|
| Q |
201 |
gtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaat |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827171 |
gtggttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaat |
5827270 |
T |
|
| Q |
301 |
acttttacttgatgaggcaac |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5827271 |
acttttacttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5768518 - 5768835
Alignment:
| Q |
1 |
actagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
100 |
Q |
| |
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|||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768518 |
actagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
5768617 |
T |
|
| Q |
101 |
gccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
5768618 |
gccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaa |
5768717 |
T |
|
| Q |
201 |
gtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaat |
300 |
Q |
| |
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|||||| | || || || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| | ||| |
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| T |
5768718 |
atggttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaat |
5768817 |
T |
|
| Q |
301 |
acttttacttgatgaggc |
318 |
Q |
| |
|
|||||| ||||| ||||| |
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| T |
5768818 |
acttttgcttgacgaggc |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 5829930 - 5829613
Alignment:
| Q |
1 |
actagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
100 |
Q |
| |
|
|||||||||| || || |||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829930 |
actagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgt |
5829831 |
T |
|
| Q |
101 |
gccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccag |
200 |
Q |
| |
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|| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| |
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| T |
5829830 |
gctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttccag |
5829731 |
T |
|
| Q |
201 |
gtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaat |
300 |
Q |
| |
|
||| || | || || || || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | ||| |
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| T |
5829730 |
atggatatgacacgtctgttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaat |
5829631 |
T |
|
| Q |
301 |
acttttacttgatgaggc |
318 |
Q |
| |
|
|||||| ||||||||||| |
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| T |
5829630 |
acttttgcttgatgaggc |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
223 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
321 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 29327444 - 29327124
Alignment:
| Q |
1 |
actagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgt |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29327444 |
actagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgc |
29327345 |
T |
|
| Q |
101 |
gccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccag |
200 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | |
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|
| T |
29327344 |
gccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctg |
29327245 |
T |
|
| Q |
201 |
gtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaat |
300 |
Q |
| |
|
|||||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| ||| |
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| T |
29327244 |
atggttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaat |
29327145 |
T |
|
| Q |
301 |
acttttacttgatgaggcaac |
321 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
29327144 |
acttttgcttgatgaggcaac |
29327124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
239 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
291 |
Q |
| |
|
||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
217 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
273 |
Q |
| |
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|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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