View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319A_low_59 (Length: 325)
Name: NF8319A_low_59
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_59 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 4083159 - 4082846
Alignment:
| Q |
12 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggggtttgatatcggtgttgtagggggcggcgtcaattttcttcttcgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4083159 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggtgtttgatatcggtgttgtagggggcggcgtcaattttcttcttcgaa |
4083060 |
T |
|
| Q |
112 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatatagaaatggacctatcaatgaattattggc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| |
|
|
| T |
4083059 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatttagaaatggacctattaataaattgttggc |
4082960 |
T |
|
| Q |
212 |
attgtcatagggcaatcttcttcccatgacaaaagatattatctatgtaagtgatttctattgctgacaatttgttctatgttctttgtcttgttcttgc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4082959 |
attgtcatagggcaatcttcttcccatgacaaaagatattatcgatgtaagtgatttctattgctgacaatttgttctatgttctttgtcttgttcctgc |
4082860 |
T |
|
| Q |
312 |
tatttaatggtttt |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4082859 |
gatttaatggtttt |
4082846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 48203029 - 48203072
Alignment:
| Q |
103 |
ttcttcgaaatcgaacactacatagagttgtgattatggcaatg |
146 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48203029 |
ttcttcggaatcgaaaactacatatagttgtgattatggcaatg |
48203072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University