View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_66 (Length: 308)

Name: NF8319A_low_66
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_66
NF8319A_low_66
[»] chr1 (16 HSPs)
chr1 (10-305)||(13244622-13244917)
chr1 (10-214)||(12963976-12964180)
chr1 (10-222)||(30368209-30368421)
chr1 (23-213)||(13271474-13271664)
chr1 (10-290)||(13100812-13101091)
chr1 (10-297)||(13080966-13081253)
chr1 (10-222)||(13094278-13094490)
chr1 (10-222)||(13070277-13070489)
chr1 (10-297)||(13085911-13086198)
chr1 (10-292)||(13007009-13007291)
chr1 (10-222)||(13129707-13129919)
chr1 (10-292)||(13204268-13204550)
chr1 (12-222)||(13161400-13161610)
chr1 (10-214)||(19279269-19279473)
chr1 (10-296)||(13065314-13065600)
chr1 (154-213)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (10-168)||(12164206-12164364)
[»] chr6 (4 HSPs)
chr6 (14-97)||(341859-341942)
chr6 (91-182)||(31380253-31380344)
chr6 (11-97)||(377572-377658)
chr6 (14-75)||(337821-337882)
[»] chr8 (1 HSPs)
chr8 (10-52)||(36668174-36668216)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 13244622 - 13244917
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  13244622 aatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaat 13244721  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244722 gcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 13244821  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttg 305  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13244822 gtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttg 13244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 12963976 - 12964180
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| ||||||    
T  12963976 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaat 12964075  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | ||||||||||    
T  12964076 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaag 12964175  T
Q  210 gtcac 214  Q
    |||||    
T  12964176 gtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 30368209 - 30368421
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||||||| |||||||||||||||| || ||| |||| |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  30368209 aatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 30368308  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  30368309 acaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaag 30368408  T
Q  210 gtcaccctgtaac 222  Q
    |||||||||||||    
T  30368409 gtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 13271664 - 13271474
Alignment:
Q  23 gattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaa 122  Q
    ||||||||||| ||||||||||| || |||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||    
T  13271664 gattgcttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaa 13271565  T
Q  123 gttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 213  Q
    | ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271564 gctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 13101091 - 13100812
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || ||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13101091 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13100992  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13100991 -caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaag 13100893  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 290  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100892 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 13080966 - 13081253
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    |||||||||||| ||||||||||| ||||||||||| || |||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || |||    
T  13080966 aatatggggagaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaat 13081065  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    |||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||    
T  13081066 gcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaag 13081165  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 297  Q
    ||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081166 gtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 13094490 - 13094278
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||     
T  13094490 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaac 13094391  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||    
T  13094390 acaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaag 13094291  T
Q  210 gtcaccctgtaac 222  Q
    |||||||||||||    
T  13094290 gtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 13070277 - 13070489
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || ||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13070277 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaat 13070376  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13070377 acaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13070476  T
Q  210 gtcaccctgtaac 222  Q
    |||||||||||||    
T  13070477 gtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 13086198 - 13085911
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    |||||||||  | ||| |||| ||||||||||| || || |||||||| | || ||||   ||| | ||||| || |||| |||||||||||| || |||    
T  13086198 aatatggggtaaggatcgcttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaat 13086099  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||    
T  13086098 gcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaag 13085999  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 297  Q
    ||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13085998 gtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 13007291 - 13007009
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || ||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13007291 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13007192  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| ||||||||| ||    
T  13007191 acaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcag 13007092  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 292  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007091 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 13129919 - 13129707
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||     
T  13129919 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaac 13129820  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13129819 acaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13129720  T
Q  210 gtcaccctgtaac 222  Q
    |||||||||||||    
T  13129719 gtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 13204550 - 13204268
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || ||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13204550 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaat 13204451  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
     ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| || | |||||||    
T  13204450 acaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaag 13204351  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 292  Q
    ||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204350 gtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 13161610 - 13161400
Alignment:
Q  12 tatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgc 111  Q
    ||||||| ||||| ||| |||||||||||||||| || |||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |    
T  13161610 tatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacac 13161511  T
Q  112 aggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggt 211  Q
    ||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||||    
T  13161510 aggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggt 13161411  T
Q  212 caccctgtaac 222  Q
    |||| ||||||    
T  13161410 caccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 19279269 - 19279473
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||| || |||||| | ||||||  |||||| || |||||||||| |||||||   ||| ||||||| || || |||||||||||||| || |||    
T  19279269 aatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaat 19279368  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    |||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  19279369 gcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaag 19279468  T
Q  210 gtcac 214  Q
    |||||    
T  19279469 gtcac 19279473  T

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Target: chr1; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 13065314 - 13065600
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||| ||| |||||||||||||||| || ||||||||    || |||   ||| ||||||| |||||||||||||||||||||||||||    
T  13065314 aatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaat 13065413  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 209  Q
    ||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||  | ||||| |    
T  13065414 gcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatg 13065513  T
Q  210 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 296  Q
    |||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065514 gtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  154 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 213  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 12164364 - 12164206
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 109  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||    | |||||| || ||  |||| || |||||||||||||| ||||| |||    
T  12164364 aatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaat 12164265  T
Q  110 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgc 168  Q
    || || || || |||||| | || || ||||| |||||  || | ||||||||||||||    
T  12164264 gctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 12164206  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 341859 - 341942
Alignment:
Q  14 tggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 97  Q
    |||||| ||||||||||||| |||||||| || |||||||| || |  ||||||||||||||  |||  |||||||||||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttc 341942  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  91 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 182  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 377572 - 377658
Alignment:
Q  11 atatggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 97  Q
    ||||||||||||||||||||||| || ||||| || || |||||||| |  |||||  ||||||| ||||  |||||||| ||||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttc 377658  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 337821 - 337882
Alignment:
Q  14 tggggagaagattgcttggaatttaagcctgaaaggtggatatcggttagaggaggcattgt 75  Q
    |||||||||||||||||||| || ||||| || |||||||| || |  ||||||||||||||    
T  337821 tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgt 337882  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 36668216 - 36668174
Alignment:
Q  10 aatatggggagaagattgcttggaatttaagcctgaaaggtgg 52  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  36668216 aatatggggagaagattgcttggaatttaaaccagagaggtgg 36668174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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