View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_70 (Length: 301)

Name: NF8319A_low_70
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_70
NF8319A_low_70
[»] chr4 (14 HSPs)
chr4 (129-284)||(38147357-38147519)
chr4 (164-278)||(28103806-28103920)
chr4 (156-278)||(12639721-12639843)
chr4 (163-252)||(917683-917772)
chr4 (156-272)||(43012754-43012870)
chr4 (185-272)||(23643431-23643518)
chr4 (185-250)||(12639208-12639273)
chr4 (156-272)||(54714873-54714989)
chr4 (188-250)||(28104360-28104421)
chr4 (188-250)||(919115-919176)
chr4 (243-274)||(918651-918682)
chr4 (156-202)||(12629834-12629880)
chr4 (156-250)||(43013130-43013224)
chr4 (236-276)||(23037998-23038038)
[»] chr2 (8 HSPs)
chr2 (157-278)||(4329599-4329720)
chr2 (156-278)||(39865298-39865420)
chr2 (156-278)||(29770766-29770888)
chr2 (144-272)||(30674429-30674557)
chr2 (157-272)||(9074598-9074713)
chr2 (159-250)||(4330136-4330226)
chr2 (168-272)||(9914204-9914308)
chr2 (188-250)||(29771299-29771360)
[»] chr3 (9 HSPs)
chr3 (1-128)||(45395432-45395560)
chr3 (156-278)||(23566889-23567011)
chr3 (158-278)||(39737724-39737844)
chr3 (159-272)||(785770-785883)
chr3 (185-272)||(30385749-30385836)
chr3 (188-250)||(39737232-39737293)
chr3 (186-272)||(53153855-53153941)
chr3 (12-78)||(50470355-50470421)
chr3 (158-250)||(23566432-23566522)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-129)||(19923-20052)
[»] chr7 (11 HSPs)
chr7 (156-278)||(31166954-31167076)
chr7 (168-274)||(21971546-21971651)
chr7 (177-260)||(27596002-27596084)
chr7 (153-272)||(28750927-28751045)
chr7 (157-272)||(38916392-38916507)
chr7 (168-272)||(27230474-27230578)
chr7 (155-270)||(15577468-15577578)
chr7 (157-250)||(21972092-21972184)
chr7 (164-272)||(32741787-32741895)
chr7 (157-250)||(38916045-38916138)
chr7 (226-276)||(21948158-21948208)
[»] chr6 (6 HSPs)
chr6 (1-128)||(17922863-17922991)
chr6 (158-272)||(8700890-8701004)
chr6 (185-272)||(12307301-12307388)
chr6 (185-272)||(7727381-7727468)
chr6 (163-272)||(604984-605096)
chr6 (156-250)||(12306970-12307064)
[»] chr8 (6 HSPs)
chr8 (160-278)||(26759207-26759325)
chr8 (165-278)||(146644-146757)
chr8 (153-272)||(308301-308420)
chr8 (164-272)||(186682-186790)
chr8 (156-247)||(187049-187140)
chr8 (188-250)||(147190-147251)
[»] chr5 (5 HSPs)
chr5 (156-278)||(39121834-39121956)
chr5 (12-128)||(3623478-3623594)
chr5 (164-272)||(14393983-14394091)
chr5 (156-271)||(20983543-20983658)
chr5 (164-272)||(25672272-25672380)
[»] chr1 (2 HSPs)
chr1 (164-272)||(40888792-40888900)
chr1 (156-222)||(23269946-23270012)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 38147357 - 38147519
Alignment:
Q  129 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 221  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  222 agagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 284  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 38147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 28103806 - 28103920
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  264 tattcaatactcttt 278  Q
    |||||||||||||||    
T  28103906 tattcaatactcttt 28103920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 12639843 - 12639721
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  12639743 aaaagctatattcaatactcttt 12639721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  163 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaat 252  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||| ||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  256 aaaagctatattcaata 272  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    ||||||||||||||||||||||| ||| |||| ||||| ||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||||| |||||||||||||| | ||||||||  |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||| ||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  256 aaaagctatattcaata 272  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||| ||||||||||||||||||||||||| | ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaatta-aatgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaatta-aatgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  243 aattaaaaataataaaagctatattcaatact 274  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 12629834 - 12629880
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatct 202  Q
    |||||||||||||||||||| ||||||| |||||||| ||| |||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatct 12629880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||| ||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 23038038 - 23037998
Alignment:
Q  236 gtcaactaattaaaaataataaaagctatattcaatactct 276  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactct 23037998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 4329599 - 4329720
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataata 256  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  257 aaagctatattcaatactcttt 278  Q
    ||||||||||||||||||||||    
T  4329699 aaagctatattcaatactcttt 4329720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 39865420 - 39865298
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  39865320 aaaagctatattcaatactcttt 39865298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 29770766 - 29770888
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||| ||||||||||||    
T  29770866 aaaagctataatcaatactcttt 29770888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  144 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaacta 243  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||| | ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  244 attaaaaataataaaagctatattcaata 272  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataata 256  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||| ||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  257 aaagctatattcaata 272  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  159 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaatta-aatgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||| ||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  268 caata 272  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 45395432 - 45395560
Alignment:
Q  1 tcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcat 99  Q
    ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  45395432 tcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctcgtgcat 45395531  T
Q  100 ggtttatgtcgtgtaataaagcattttcc 128  Q
    |||||||||||||||||||||||||||||    
T  45395532 ggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 23567011 - 23566889
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  23566911 aaaagctatattcaatactcttt 23566889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 39737844 - 39737724
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataa 257  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||| | | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  258 aagctatattcaatactcttt 278  Q
    ||||||||||||||| |||||    
T  39737744 aagctatattcaatattcttt 39737724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  159 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaa 258  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| | ||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  259 agctatattcaata 272  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||| ||||||| || ||| | || ||||| ||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||| ||||||||||| | ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaatta-aatgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  186 aataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||| ||  ||||||||| ||| | || ||||| ||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  12 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 78  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| || | |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaata-aatgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19923 - 20052
Alignment:
Q  1 tcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcat 99  Q
    ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||    
T  19923 tcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctcgtgcat 20022  T
Q  100 ggtttatgtcgtgtaataaagcattttcca 129  Q
    ||||||||||||||||||||||||||||||    
T  20023 ggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 31167076 - 31166954
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  31166976 aaaagctatattcaatactcttt 31166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  268 caatact 274  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  177 taaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaag 260  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  153 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaat 252  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||| ||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  253 aataaaagctatattcaata 272  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataata 256  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||| ||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  257 aaagctatattcaata 272  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||| ||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  268 caata 272  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  155 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataa 254  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||| ||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  255 taaaagctatattcaa 270  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaatta-aatgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||| ||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  264 tattcaata 272  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||| ||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 21948158 - 21948208
Alignment:
Q  226 tgtaatatatgtcaactaattaaaaataataaaagctatattcaatactct 276  Q
    ||||| ||| ||||||||||||||| |||||||| || |||||||||||||    
T  21948158 tgtaaaataagtcaactaattaaaattaataaaaactctattcaatactct 21948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 17922863 - 17922991
Alignment:
Q  1 tcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 98  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17922863 tcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttctcgtgca 17922961  T
Q  99 tggtttatgtcgtgtaataaagcattttcc 128  Q
    ||||||||||||||||||||||||||||||    
T  17922962 tggtttatgtcgtgtaataaagcattttcc 17922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataa 257  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||| ||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  258 aagctatattcaata 272  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||| |||||||||| ||| |||| ||||| ||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||||||||||||||  || | || ||||| ||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  163 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaac---taattaaaaataataaaa 259  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||| ||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  260 gctatattcaata 272  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||| ||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 26759207 - 26759325
Alignment:
Q  160 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaa 259  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  260 gctatattcaatactcttt 278  Q
    |||||||| ||||||||||    
T  26759307 gctatattaaatactcttt 26759325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 146644 - 146757
Alignment:
Q  165 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagctat 264  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  265 attcaatactcttt 278  Q
    ||||||||||||||    
T  146744 attcaatactcttt 146757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  153 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaat 252  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||| ||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  253 aataaaagctatattcaata 272  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||| | ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  264 tattcaata 272  Q
    |||||||||    
T  186782 tattcaata 186790  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaatta 247  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||| ||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 250  Q
    |||||| || ||||||||||||||||||| ||||| | | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaatta-aatataaaatatgtcaactaattaaaa 147190  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 39121956 - 39121834
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  256 aaaagctatattcaatactcttt 278  Q
    ||||| |||||||||||||||||    
T  39121856 aaaagttatattcaatactcttt 39121834  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 3623478 - 3623594
Alignment:
Q  12 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcatggtttatgtcgt 111  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| |||||||||||||||| | ||||    
T  3623478 aaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgt 3623577  T
Q  112 gtaataaagcattttcc 128  Q
      |||||||||||||||    
T  3623578 caaataaagcattttcc 3623594  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||| | ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  264 tattcaata 272  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataat 255  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||| ||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  256 aaaagctatattcaat 271  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||| ||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  264 tattcaata 272  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||| ||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  264 tattcaata 272  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 23269946 - 23270012
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatta 222  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaatta 23270012  T

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