View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_71 (Length: 301)
Name: NF8319A_low_71
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 29408434 - 29408619
Alignment:
| Q |
3 |
aggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
102 |
Q |
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| T |
29408434 |
aggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
29408533 |
T |
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| Q |
103 |
aagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcatcaatgatgtgtggcttaaatatgattgcaatgagcaat |
188 |
Q |
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| T |
29408534 |
aagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcattaatgatgtgtggcttaaatatgattgcaatgagcaat |
29408619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 29456183 - 29456102
Alignment:
| Q |
21 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
102 |
Q |
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| T |
29456183 |
tggaatatactttgtagattacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa |
29456102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 29425705 - 29425821
Alignment:
| Q |
21 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctat |
120 |
Q |
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| T |
29425705 |
tggaatatacttcatagattacaatgatggcctcaaaagatatccaaaaatgtcagctgtatggttcaagaattttctacaacataaaatagttgcatat |
29425804 |
T |
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| Q |
121 |
ggtgatttgcgctaaga |
137 |
Q |
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| T |
29425805 |
ggtgattcacgctaaga |
29425821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 35275108 - 35275002
Alignment:
| Q |
183 |
agcaatttaataaatattgtgtggagatttttgagagattgtttaattacagggtctaggtcataaaagttgactaggtcttggacacattgataatttg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
35275108 |
agcaatttaataaatattgtgtggagatttttgagagattgtttaattacagggtctaggtcataaaggttgactagatcttggacacattgataatttg |
35275009 |
T |
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| Q |
283 |
taatatt |
289 |
Q |
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|| |||| |
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| T |
35275008 |
tagtatt |
35275002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 35307058 - 35306991
Alignment:
| Q |
207 |
agatttttgagagattgtttaattacagggtctaggtcataaaagttgactaggtcttggacacattg |
274 |
Q |
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| T |
35307058 |
agatttttgtgggattgattaattacaaggtctaagtcataaaggttgactagatcttggacacattg |
35306991 |
T |
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