View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_73 (Length: 297)
Name: NF8319A_low_73
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 16978341 - 16978064
Alignment:
| Q |
18 |
atcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978341 |
atcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagc |
16978242 |
T |
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| Q |
118 |
cttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978241 |
cttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatca |
16978142 |
T |
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| Q |
218 |
tttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978141 |
tttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
16978064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 17030210 - 17029936
Alignment:
| Q |
21 |
atctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagcctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17030210 |
atctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagcctt |
17030111 |
T |
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| Q |
121 |
ggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcattt |
220 |
Q |
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| T |
17030110 |
ggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcattt |
17030011 |
T |
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| Q |
221 |
caaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17030010 |
caaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
17029936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 17048548 - 17048274
Alignment:
| Q |
21 |
atctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagcctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17048548 |
atctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagcctt |
17048449 |
T |
|
| Q |
121 |
ggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcattt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17048448 |
ggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcattt |
17048349 |
T |
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| Q |
221 |
caaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17048348 |
caaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
17048274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 17109673 - 17109396
Alignment:
| Q |
18 |
atcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagc |
117 |
Q |
| |
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||||| |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || ||| |
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| T |
17109673 |
atcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagc |
17109574 |
T |
|
| Q |
118 |
cttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatca |
217 |
Q |
| |
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|| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17109573 |
ctgggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctgtgaaatca |
17109474 |
T |
|
| Q |
218 |
tttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagt |
295 |
Q |
| |
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|||| ||| || |||||||||||| || ||| |||||||| |||||||| || || ||||| || |||||||||| |
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| T |
17109473 |
tttcgaaattaatacacttataaacatcaagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagt |
17109396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 17024547 - 17024305
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaatt-----ctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||| | | |
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| T |
17024547 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17024448 |
T |
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| Q |
119 |
ttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
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|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
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| T |
17024447 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17024348 |
T |
|
| Q |
219 |
ttcaaaactactacacttataaaggtcgagaaaatcaagattt |
261 |
Q |
| |
|
||||||| || || ||||||||| | ||||| ||||||||||| |
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| T |
17024347 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17024305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 17089819 - 17089577
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
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| T |
17089819 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaat |
17089720 |
T |
|
| Q |
119 |
ttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
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|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
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| T |
17089719 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17089620 |
T |
|
| Q |
219 |
ttcaaaactactacacttataaaggtcgagaaaatcaagattt |
261 |
Q |
| |
|
||||||| || || ||||||||| | ||||| ||||||||||| |
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|
| T |
17089619 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17089577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 17035309 - 17035072
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
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| T |
17035309 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17035210 |
T |
|
| Q |
119 |
ttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
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|
| T |
17035209 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17035110 |
T |
|
| Q |
219 |
ttcaaaactactacacttataaaggtcgagaaaatcaa |
256 |
Q |
| |
|
||||||| || || ||||||||| | ||||| |||||| |
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|
| T |
17035109 |
ttcaaaattattaaacttataaacgccgagataatcaa |
17035072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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