View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_74 (Length: 297)
Name: NF8319A_low_74
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 29104383 - 29104100
Alignment:
| Q |
9 |
aacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaat |
108 |
Q |
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| T |
29104383 |
aacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaat |
29104284 |
T |
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| Q |
109 |
tcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaagg |
208 |
Q |
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| T |
29104283 |
tcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaagg |
29104184 |
T |
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| Q |
209 |
attcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt |
292 |
Q |
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| T |
29104183 |
attcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatt |
29104100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 29090122 - 29089856
Alignment:
| Q |
9 |
aacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaat |
108 |
Q |
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||||||||||| | |||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||| |
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| T |
29090122 |
aacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaat |
29090023 |
T |
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| Q |
109 |
tcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaagg |
208 |
Q |
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| T |
29090022 |
tcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaagg |
29089923 |
T |
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| Q |
209 |
attcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatct |
275 |
Q |
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| T |
29089922 |
actcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatct |
29089856 |
T |
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