View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_77 (Length: 295)

Name: NF8319A_low_77
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_77
NF8319A_low_77
[»] chr7 (4 HSPs)
chr7 (8-282)||(7237715-7237986)
chr7 (37-133)||(23113855-23113951)
chr7 (55-152)||(29428946-29429043)
chr7 (181-216)||(23113974-23114009)
[»] scaffold0097 (1 HSPs)
scaffold0097 (12-282)||(21307-21572)
[»] chr8 (4 HSPs)
chr8 (12-282)||(22535855-22536120)
chr8 (12-282)||(25993776-25994041)
chr8 (12-282)||(22531170-22531435)
chr8 (105-154)||(36549387-36549436)
[»] chr5 (3 HSPs)
chr5 (12-282)||(13191601-13191866)
chr5 (118-152)||(16597673-16597707)
chr5 (76-136)||(4943585-4943645)
[»] chr2 (2 HSPs)
chr2 (12-282)||(20717470-20717735)
chr2 (76-152)||(28219076-28219152)
[»] chr6 (3 HSPs)
chr6 (12-282)||(33091128-33091394)
chr6 (55-152)||(19694555-19694652)
chr6 (51-152)||(10871257-10871358)
[»] chr3 (7 HSPs)
chr3 (12-282)||(49368249-49368518)
chr3 (12-282)||(20983232-20983486)
chr3 (63-153)||(14567889-14567979)
chr3 (65-127)||(17575791-17575853)
chr3 (113-153)||(35231809-35231849)
chr3 (76-152)||(42029280-42029356)
chr3 (99-152)||(40024845-40024898)
[»] chr1 (4 HSPs)
chr1 (12-282)||(30190688-30190943)
chr1 (18-274)||(31991514-31991770)
chr1 (55-136)||(19337655-19337736)
chr1 (113-152)||(35306754-35306793)
[»] scaffold0402 (1 HSPs)
scaffold0402 (55-136)||(717-798)
[»] scaffold0039 (1 HSPs)
scaffold0039 (76-152)||(56974-57050)
[»] chr4 (2 HSPs)
chr4 (111-152)||(48084775-48084816)
chr4 (76-152)||(41809887-41809963)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 7237986 - 7237715
Alignment:
Q  8 atgtgatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaat 106  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7237986 atgtgatggtatataataaaatttcattgtttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccattctatatcactcaat 7237887  T
Q  107 ccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctc 206  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  7237886 ccttcaatttctcattcccccaaatttgggaggtatccaatggaataaaacttgtgtctttaaattttac----tattctaccctcattttatttgcctc 7237791  T
Q  207 ttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7237790 ttcctctacttgatcataattttcaacacgttcttttctctatttttactgactgctcatttcactttcatcttct 7237715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 23113855 - 23113951
Alignment:
Q  37 ttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaattt 133  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| |||||||||||||| ||||||||||    
T  23113855 ttggattgatgggatgtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaatttctcatttcccccaattt 23113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    ||||||| |||||| ||||  |||||||| ||||||||| ||| |||||  || | |||||| |||||||| ||||||||||  ||||||||||||||    
T  29428946 aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat 29429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
Q  181 tattctaccctcattttatttgcctcttcctctact 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113974 tattctaccctcattttatttgcctcttcctctact 23114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 21572 - 21307
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  21572 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 21473  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  21472 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 21377  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  21376 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 21307  T

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Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 22536120 - 22535855
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  22536120 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 22536021  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  22536020 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 22535925  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22535924 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 22535855  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 25994041 - 25993776
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  25994041 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 25993942  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  25993941 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 25993846  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  25993845 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 25993776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 22531435 - 22531170
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  22531435 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 22531336  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  22531335 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 22531240  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22531239 tctactcaatcacaattttaaacacgttcttttctctatttctactgactg--catttcactttcatcttct 22531170  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
Q  105 atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa 154  Q
    ||||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  36549436 atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa 36549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 13191866 - 13191601
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  13191866 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 13191767  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  13191766 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 13191671  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  13191670 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 13191601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
Q  118 tcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||||||||||||| ||||||||||||||||||    
T  16597707 tcattccccccaatttaggaggtatgcaatggaat 16597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    |||||| | ||||||||| ||| |||||| |||||||||||  |||||| |||||||||||    
T  4943585 atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg 4943645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 20717735 - 20717470
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  20717735 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatcctt 20717636  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  20717635 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 20717540  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  20717539 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 20717470  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  28219076 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 28219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 33091128 - 33091394
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatggg-atgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcct 109  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||  ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||    
T  33091128 gatggtatataataaaattccattgtttggattgatggggatgtacgtggaatggaatggaatgcaatggaaccaattccattctataccactcaatcct 33091227  T
Q  110 tcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| ||||||||||||||||    
T  33091228 tcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttc 33091323  T
Q  210 ctctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  33091324 ctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 33091394  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||  ||   |||||||| |||| |||||||||||||||||||  | ||||||||||||    
T  19694652 aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat 19694555  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 10871257 - 10871358
Alignment:
Q  51 tgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatgga 150  Q
    ||||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||    
T  10871257 tgtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatgga 10871356  T
Q  151 at 152  Q
    ||    
T  10871357 at 10871358  T

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Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 49368518 - 49368249
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgg----gatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaat 106  Q
    |||||||| |||||||||||||||||| ||||||||||    |||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||    
T  49368518 gatggtatataataaaattccattgtttggattgatggaatggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaat 49368419  T
Q  107 ccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctc 206  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||    
T  49368418 ccttcaatttctcattctccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctc 49368323  T
Q  207 ttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  49368322 ttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 49368249  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 20983232 - 20983486
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| ||||||||||||||           ||||||||  ||||| || ||||||||| ||||| ||||||||||||    
T  20983232 gatggtatataataaaattccattgtttggattgatgggatg-----------gaatggaatgcaatgaaaccaattccattctataccactcaatcctt 20983320  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  20983321 caatttcttattccccccaatttgggaggtatccaatgaaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 20983416  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  20983417 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 20983486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
Q  63 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata 153  Q
    ||||||||| |||||||||   ||||||||| ||| ||  ||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  14567889 ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata 14567979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
Q  65 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc 127  Q
    ||||||||| ||||||||  ||||||||  |||||||||||||||||||||| ||||||||||    
T  17575791 aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc 17575853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
Q  113 atttctcattccccccaatttgggaggtatgcaatggaata 153  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35231849 atttttcattccccccaatttgggaggtatgcaatggaata 35231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  42029356 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 42029280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
Q  99 cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  40024898 cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat 40024845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 30190943 - 30190688
Alignment:
Q  12 gatggtatttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatcctt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||          ||||||||| ||||| ||||||||||||    
T  30190943 gatggtatataataaaattccattgtttggattgatgggatgtacatggaatggaatggaac----------caattccattctataccactcaatcctt 30190854  T
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcc 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||    
T  30190853 caatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcc 30190758  T
Q  211 tctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcactttcatcttct 282  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  30190757 tctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcactttcatcttct 30190688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 31991770 - 31991514
Alignment:
Q  18 atttaataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||     
T  31991770 attttataaaattccattgtttggattgatgagatgtaaatggaatggaatggaacacaatggaatcaattccattctataccactcattccttcaattc 31991671  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||| ||||| |||||||||  |||||||||||| |||| ||||    |||||||||||||||||||||| |||||||||||||    
T  31991670 ctcattccccccaatttggg-ggtatccaatggaatggaacttgtgtcttgaaatattac----tattctaccctcattttatttgtctcttcctctact 31991576  T
Q  217 tgatcataattttcaacacgttcttttctcta----tttctactgactgctcatttcacttt 274  Q
      |  ||||||| | |||||| |||||||| |    || ||||||||||||||| |||||||    
T  31991575 caaatataatttcccacacgtccttttctccattacttcctactgactgctcatctcacttt 31991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  19337655 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 19337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
Q  113 atttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaat 35306754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 717 - 798
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  717 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 56974 - 57050
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||| ||| |||||| |   ||| ||| ||||||||||||| ||||||||||| |||||||||    
T  56974 atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat 57050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  48084775 caatttttcattccccccaatttgggaggtatacgatggaat 48084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | |||||||  |||| |||||| || | ||||||  ||||||||||||||||||| |||| |||||||||    
T  41809963 atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat 41809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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