View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_8 (Length: 531)
Name: NF8319A_low_8
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 6513919 - 6514108
Alignment:
| Q |
7 |
catctaccttagctaagtcattgcctaaatcaagcacattgtatgttatatcaaaaggaaaagtacaacatattcgaccaacaggacctataagagacat |
106 |
Q |
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| T |
6513919 |
catctaccttagctaagtcattgcctaaatcaagcacattgtatgttatatcaaaaggaaatgtacaacatattcgaccaacaggacctataagagacat |
6514018 |
T |
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| Q |
107 |
agttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatactcctaattgtgaagatttaaacaggtatgatac |
196 |
Q |
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| T |
6514019 |
agttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatacccctaattgtgaagatttaaacaggtatgatac |
6514108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 363 - 522
Target Start/End: Original strand, 6515023 - 6515182
Alignment:
| Q |
363 |
tgaaccttaaagttttactttactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcttgg |
462 |
Q |
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| T |
6515023 |
tgaaccttaaagttttactctactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcctgg |
6515122 |
T |
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| Q |
463 |
gaaccattacatgatgtgaaagatgttacactgatgacaccatgtaaatccaatattctt |
522 |
Q |
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| T |
6515123 |
gaaccattacatgatatgaaagatgttacactgatgacaccatgtaaatccaatattctt |
6515182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 6514146 - 6514230
Alignment:
| Q |
270 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatggactttggtccctcgtatcatttttggggtcatttttt |
354 |
Q |
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| T |
6514146 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatgaactttggttcctcgtatcatttttggggtcatttttt |
6514230 |
T |
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