View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_84 (Length: 282)

Name: NF8319A_low_84
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_84
NF8319A_low_84
[»] chr3 (1 HSPs)
chr3 (1-282)||(50441351-50441635)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 50441635 - 50441351
Alignment:
Q  1 ttcttgatgcactgattagtttcttttaatttgtaattgtcatctgaatnnnnnnnnnnn---ttattgaatgcaggtcaccattcactaggaaaggtta 97  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  50441635 ttcttgatgcactaattagtttctattaatttgtaattgtcatctgaatcaaaaaaaaaaaaattattgaatgcaggtcaccattcactaggaaaggtta 50441536  T
Q  98 caataccaaacaatatatggaaaattataagccagatggtgacatatcttttgtaagctctggaaggtcgagtacggaccgcatgttgcctccattgcat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50441535 caataccaaacaatatatggaaaattataagccagatggtgacatatcttttgtaagctctggaaggtcgagtacggaccgcatgttgcctccattgcat 50441436  T
Q  198 aacaactcagagccaggcccttggatatcatgtagctcagaatcagatgtaaactacagctttgagtctatcattcacggaagga 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50441435 aacaactcagagccaggcccttggatatcatgtagctcagaatcagatgtaaactacagctttgagtctatcattcacggaagga 50441351  T

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