View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_85 (Length: 282)
Name: NF8319A_low_85
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40586120 - 40586365
Alignment:
| Q |
1 |
tcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatgga------gctggagcaggagctggaggtggagttggataagga |
94 |
Q |
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| T |
40586120 |
tcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtggagttggataagga |
40586219 |
T |
|
| Q |
95 |
gcaagtggaactggcattataaaataactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccattcattttttcaac |
194 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40586220 |
gcaagtggaactggcattataaaagaactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccatccattttttcaac |
40586319 |
T |
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| Q |
195 |
tcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40586320 |
tcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
40586365 |
T |
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