View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_87 (Length: 278)
Name: NF8319A_low_87
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 48669640 - 48669392
Alignment:
| Q |
11 |
ggatcacccacgcgttgattgattaatttaattaaatagtaatagatgcatttgcatatttataaagtttttgtgtgcataccttgagttcatcatcagg |
110 |
Q |
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| T |
48669640 |
ggatcaaccacgcgttgattgattaatttaattaaatagtaatagatgcatttgcatatttataaagtttttgtgtgcataccttgagttcatcatcagg |
48669541 |
T |
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| Q |
111 |
ttgatagcatgcaaaatcaatgagataaataggacgtggccttgacatgaagtaaagagtgaaagtgaaaacaaagacagcaagagaagagagaacagat |
210 |
Q |
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| T |
48669540 |
ttgatagcatgcaaaatcaatgagataaataggacgtggccttgacatgaagtaaagagtgaaagtgaaaacaaagacagcaagagaagagagaacagat |
48669441 |
T |
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| Q |
211 |
gcaagatcataagttgcatcttcccaaatcttcttccaaagatcttctt |
259 |
Q |
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| T |
48669440 |
gcaagatcataagttgcatcttcccaaatcttcttccaaagatcttctt |
48669392 |
T |
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