View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_89 (Length: 277)

Name: NF8319A_low_89
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_89
NF8319A_low_89
[»] chr3 (14 HSPs)
chr3 (5-270)||(18871938-18872200)
chr3 (160-270)||(19395053-19395163)
chr3 (5-154)||(19394838-19394984)
chr3 (5-161)||(19382584-19382737)
chr3 (138-206)||(19466064-19466132)
chr3 (205-270)||(19382894-19382960)
chr3 (26-161)||(19439869-19440004)
chr3 (200-263)||(19466249-19466312)
chr3 (212-257)||(17725508-17725553)
chr3 (212-257)||(19026737-19026782)
chr3 (207-263)||(18148704-18148760)
chr3 (160-204)||(19382799-19382843)
chr3 (117-165)||(24493086-24493134)
chr3 (30-165)||(25464809-25464941)
[»] chr8 (1 HSPs)
chr8 (231-267)||(8461636-8461672)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 18872200 - 18871938
Alignment:
Q  5 attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||   |||||||  |||||||||||||||||| |||| |||||    
T  18872200 attatgcatgtcacagtttgtgcattgttatccaaatcgtggatagagtttcccaaatt---gagccaatattttgatatcaacaattattaattgtatg 18872104  T
Q  105 agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttcacgtgttgtaagttgttctttgggattgtccacacctcatgtatttctct 204  Q
    |||| | ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18872103 agatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctct 18872004  T
Q  205 acatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgttgcttccaatat 270  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18872003 acatattagtttatgcagatggtttaagaataagagtttgtgtagaaactttgctgcttccaatat 18871938  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 19395053 - 19395163
Alignment:
Q  160 ttgtaagttgttctttgggattgtccacacctcatgtatttctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgtt 259  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19395053 ttgtaagttgttctttgggctagtgcacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgct 19395152  T
Q  260 gcttccaatat 270  Q
    |||||||||||    
T  19395153 gcttccaatat 19395163  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 19394838 - 19394984
Alignment:
Q  5 attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg 104  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||   ||||| ||  ||||||||||||||||||||||| |||||    
T  19394838 attatgcatgtcacagtttgtgcattgttatccaattcgtggatagagttttccaaat---agagcaaatattttgatatcaacaattaataattgtatg 19394934  T
Q  105 agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttc 154  Q
    |||| | ||||||||||||||||||||||||| ||||||||| |||||||    
T  19394935 agatgagatcatatgtgattgtaacactgttgtttctgaatttatgtttc 19394984  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 19382584 - 19382737
Alignment:
Q  5 attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg 104  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||   |||   ||||||||||  ||||||||||||||||||||||| |||||    
T  19382584 attatgcatgtcgcagtttgtgccttgttatccaaatcgtggatagagtttaccaa---atagagccaatattttgatatcaacaattaataattgtatg 19382680  T
Q  105 agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttcacgtgtt 161  Q
    |||| | ||||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  19382681 agatgagatcatatgtgattgtaatactgttgtttctgaattcatgtttcacttgtt 19382737  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 19466064 - 19466132
Alignment:
Q  138 ttctgaattcatgtttcacgtgttgtaagttgttctttgggattgtccacacctcatgtatttctctac 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19466064 ttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctctac 19466132  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 19382894 - 19382960
Alignment:
Q  205 acatattagtttatgcag-atggtttaagaataagagtttgtttagaaactttgttgcttccaatat 270  Q
    |||||||||||||||||| |||||||||||| | |||||||| |||| |||||| ||||||||||||    
T  19382894 acatattagtttatgcaggatggtttaagaacatgagtttgtgtagacactttgctgcttccaatat 19382960  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 19439869 - 19440004
Alignment:
Q  26 gcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatgagattaaatcatatgtgatt- 124  Q
    ||||||||||  |||||||||||| | || ||||||  ||||||||||  || ||||||| | |||||| | | ||||||||| | |||||||||||||     
T  19439869 gcattgttatcgaaatcgtggatataatt-ttcaaa--atagagccaatattgtgatatcgataattaagagttgtatgagatgagatcatatgtgatta 19439965  T
Q  125 --gtaacactgttgattctgaattcatgtttcacgtgtt 161  Q
      |||||||| ||| ||||||||||||||||||| ||||    
T  19439966 ttgtaacactattgcttctgaattcatgtttcacatgtt 19440004  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 19466249 - 19466312
Alignment:
Q  200 tctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgttgctt 263  Q
    |||||| ||||||| |||||||||| |||  ||||||||||||||| ||||||||||| |||||    
T  19466249 tctctatatattaggttatgcagatagttgcagaataagagtttgtgtagaaactttgctgctt 19466312  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 17725553 - 17725508
Alignment:
Q  212 agtttatgcagatggtttaagaataagagtttgtttagaaactttg 257  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||    
T  17725553 agtttatgcagatggttgtagaataagagtttgtgtagaaactttg 17725508  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 19026782 - 19026737
Alignment:
Q  212 agtttatgcagatggtttaagaataagagtttgtttagaaactttg 257  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||    
T  19026782 agtttatgcagatggttgtagaataagagtttgtgtagaaactttg 19026737  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 18148704 - 18148760
Alignment:
Q  207 atattagtttatgcagatggtttaagaataagagtttgtttagaaactttgttgctt 263  Q
    |||||||||||||||||| |||  ||||||||||||||| |||||| |||| |||||    
T  18148704 atattagtttatgcagatagttgcagaataagagtttgtgtagaaattttgctgctt 18148760  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 19382799 - 19382843
Alignment:
Q  160 ttgtaagttgttctttgggattgtccacacctcatgtatttctct 204  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||    
T  19382799 ttgtaagttgttctttgggcttggccacacctcatgtatctctct 19382843  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 24493134 - 24493086
Alignment:
Q  117 atgtgattgtaacactgttgattctgaattcatgtttcacgtgttgtaa 165  Q
    ||||||||||| || |||||||| ||||||||| |||||| ||||||||    
T  24493134 atgtgattgtaccattgttgattttgaattcatctttcacttgttgtaa 24493086  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 25464809 - 25464941
Alignment:
Q  30 tgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatgagattaaatcatatgtgattgtaac 129  Q
    |||||||||||| ||||||| | || ||||||  ||||||||||  || | |||| |||||| || | | ||||||||| | ||||||||| |||||| |    
T  25464809 tgttatgcaaatggtggatataatt-ttcaaa--atagagccaatattgtaatataaacaataaaaagttgtatgagatgatatcatatgtcattgtacc 25464905  T
Q  130 actgttgattctgaattcatgtttcacgtgttgtaa 165  Q
    | ||||| | |||||||||  |||||| ||||||||    
T  25464906 aatgttgctgctgaattcaattttcacttgttgtaa 25464941  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 8461636 - 8461672
Alignment:
Q  231 agaataagagtttgtttagaaactttgttgcttccaa 267  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  8461636 agaataagagtttgtgtagaaacattgttgcttccaa 8461672  T

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