View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_9 (Length: 498)
Name: NF8319A_low_9
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 17701395 - 17700923
Alignment:
| Q |
18 |
acatcatgaacaaacaccattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
117 |
Q |
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| T |
17701395 |
acatcatgaacaaacactattcttcaccttcttctcaccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17701296 |
T |
|
| Q |
118 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
217 |
Q |
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| T |
17701295 |
taagaaaaacccaggttcaagaatctacagttgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17701196 |
T |
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| Q |
218 |
tctaagattcttgttcaacctgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttt |
317 |
Q |
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| T |
17701195 |
tcgaagattcttgttcaacctgaaacaaacaaacagatccatgatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgttt |
17701096 |
T |
|
| Q |
318 |
tttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccgacaatgcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
17701095 |
tttcttcttctcttcacaaccatgatcatgat---gatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtatttttatccaacaatgcttt |
17700999 |
T |
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| Q |
418 |
gaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
493 |
Q |
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| T |
17700998 |
gaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
17700923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 17662684 - 17663156
Alignment:
| Q |
18 |
acatcatgaacaaacaccattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
117 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17662684 |
acatcatgaacaaaccctattcttcaccttcttctcaccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17662783 |
T |
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| Q |
118 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
217 |
Q |
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| T |
17662784 |
taagaaaaacccaggttcaagaatctacaattgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17662883 |
T |
|
| Q |
218 |
tctaagattcttgttcaacctgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
17662884 |
tctaagattcttgttcaacctgaaacaaacaaacagatccgtgatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttt |
17662983 |
T |
|
| Q |
318 |
tttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccgacaatgcttt |
417 |
Q |
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| T |
17662984 |
tttcttcttctcttcacaaccatgatc---atgatgattggaaaccgaagaaccatacaagtgatgtttgtcacaaggtattttcatccaacactgcttt |
17663080 |
T |
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| Q |
418 |
gaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
493 |
Q |
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| T |
17663081 |
gaagggacatatgagatggcatactccaaagggtttgaagaaggatactattattccctcactgactgccccatct |
17663156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 314 - 493
Target Start/End: Complemental strand, 21900125 - 21899949
Alignment:
| Q |
314 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccgacaatg |
413 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
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| Q |
414 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
493 |
Q |
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||||||| || ||||||||||||||||||| |||||||| |||||| ||| ||||| ||| |||||||||||| |||| |
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| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccccatct |
21899949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 22667820 - 22667771
Alignment:
| Q |
25 |
gaacaaacaccattcttcaccttcttctcaccattcctttgataaaccca |
74 |
Q |
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| T |
22667820 |
gaacaaacactattcttcaccttcttctcattattcgtttgataaaccca |
22667771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
66 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
126 |
Q |
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| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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