View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_94 (Length: 269)
Name: NF8319A_low_94
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_94 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 4512911 - 4512648
Alignment:
| Q |
6 |
aagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacatttaaatgtgaaaaatttgaaacttcttttctctcc |
105 |
Q |
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| T |
4512911 |
aagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttgaaacttcttttctctcc |
4512812 |
T |
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| Q |
106 |
gannnnnnnnnnnnnnnnnnnagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatg |
205 |
Q |
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| T |
4512811 |
gagtgtgtgtgcttgtgtgtgagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatg |
4512712 |
T |
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| Q |
206 |
gcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaag |
269 |
Q |
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| T |
4512711 |
gcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaag |
4512648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 43206652 - 43206699
Alignment:
| Q |
180 |
aacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtga |
227 |
Q |
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| T |
43206652 |
aacaggctcgtgttcatgagcccaaggcttcttgaagtgttgaagtga |
43206699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 43432638 - 43432742
Alignment:
| Q |
152 |
gtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaa |
251 |
Q |
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| T |
43432638 |
gtacattaacagcatcaagaaggtttttaacaggttcgtgttcatgagcccacggcttcttgaaatgttggagtgattctttacgggaactgacaatcaa |
43432737 |
T |
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| Q |
252 |
accct |
256 |
Q |
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| T |
43432738 |
tccct |
43432742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 3533733 - 3533801
Alignment:
| Q |
20 |
cctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacatttaaatgtgaaaaatttga |
89 |
Q |
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| T |
3533733 |
cctgatattccaatcaacactgttggcttaatttgccg-aaaagaaaacattcaaatatgagaaatttga |
3533801 |
T |
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