View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_97 (Length: 266)
Name: NF8319A_low_97
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_97 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 41704904 - 41705151
Alignment:
| Q |
7 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
106 |
Q |
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| T |
41704904 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
41705003 |
T |
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| Q |
107 |
aaccaagagacgaggggatcagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
206 |
Q |
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| T |
41705004 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
41705103 |
T |
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| Q |
207 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaac |
254 |
Q |
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| T |
41705104 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaac |
41705151 |
T |
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 1453265 - 1453340
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgca |
252 |
Q |
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| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgca |
1453340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 1464957 - 1465032
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgca |
252 |
Q |
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| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgca |
1465032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
204 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
240 |
Q |
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| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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