View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_high_11 (Length: 381)

Name: NF8319_high_11
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_high_11
NF8319_high_11
[»] chr5 (20 HSPs)
chr5 (156-374)||(13839455-13839673)
chr5 (1-92)||(13839300-13839391)
chr5 (156-288)||(5696477-5696608)
chr5 (196-356)||(43265157-43265318)
chr5 (181-315)||(12150598-12150734)
chr5 (181-314)||(31632864-31632995)
chr5 (181-314)||(19389748-19389882)
chr5 (180-248)||(2021073-2021142)
chr5 (181-285)||(11168295-11168400)
chr5 (186-232)||(27489848-27489895)
chr5 (181-219)||(1175866-1175904)
chr5 (181-312)||(37909020-37909152)
chr5 (164-248)||(1176375-1176458)
chr5 (181-248)||(2163992-2164060)
chr5 (180-248)||(35701496-35701565)
chr5 (156-291)||(9684686-9684822)
chr5 (181-288)||(17668054-17668162)
chr5 (185-314)||(25626528-25626658)
chr5 (187-248)||(25779588-25779650)
chr5 (180-247)||(33718275-33718343)
[»] chr2 (16 HSPs)
chr2 (156-353)||(11205017-11205210)
chr2 (182-288)||(38216438-38216545)
chr2 (181-248)||(5193158-5193226)
chr2 (179-248)||(8410848-8410918)
chr2 (181-246)||(25463665-25463731)
chr2 (176-244)||(42644742-42644811)
chr2 (180-283)||(4042022-4042126)
chr2 (180-283)||(13765858-13765962)
chr2 (189-286)||(14167011-14167109)
chr2 (180-283)||(31550181-31550285)
chr2 (181-219)||(32950999-32951037)
chr2 (180-283)||(38023366-38023470)
chr2 (180-263)||(40357535-40357619)
chr2 (181-283)||(36567198-36567301)
chr2 (181-314)||(14385107-14385241)
chr2 (176-286)||(35812388-35812499)
[»] chr3 (27 HSPs)
chr3 (176-353)||(23613084-23613263)
chr3 (165-358)||(42157722-42157911)
chr3 (156-330)||(42668052-42668230)
chr3 (181-338)||(5166870-5167028)
chr3 (181-340)||(21777210-21777377)
chr3 (180-283)||(17642647-17642751)
chr3 (180-314)||(34306625-34306759)
chr3 (156-286)||(39478149-39478281)
chr3 (176-248)||(105088-105161)
chr3 (164-243)||(23615678-23615757)
chr3 (179-286)||(2420714-2420822)
chr3 (165-286)||(15499203-15499325)
chr3 (180-283)||(25428726-25428830)
chr3 (181-246)||(3333960-3334025)
chr3 (180-353)||(21856031-21856211)
chr3 (165-284)||(44401132-44401252)
chr3 (181-314)||(1132855-1132989)
chr3 (181-248)||(44979490-44979558)
chr3 (181-291)||(11500151-11500263)
chr3 (257-350)||(24588290-24588383)
chr3 (186-286)||(32858885-32858986)
chr3 (187-229)||(34729263-34729307)
chr3 (186-248)||(36796517-36796580)
chr3 (181-281)||(46891446-46891547)
chr3 (181-244)||(7302181-7302245)
chr3 (185-248)||(9241574-9241638)
chr3 (179-248)||(38593045-38593115)
[»] chr4 (22 HSPs)
chr4 (183-353)||(56439295-56439454)
chr4 (176-288)||(32485917-32486030)
chr4 (180-283)||(32060704-32060808)
chr4 (180-283)||(38317147-38317251)
chr4 (181-266)||(40422993-40423079)
chr4 (180-286)||(42649877-42649986)
chr4 (165-283)||(7182095-7182214)
chr4 (181-283)||(41844493-41844596)
chr4 (180-283)||(21730246-21730350)
chr4 (181-314)||(23708163-23708297)
chr4 (181-288)||(28880044-28880152)
chr4 (181-280)||(49936563-49936663)
chr4 (181-248)||(51431037-51431105)
chr4 (186-283)||(52594551-52594649)
chr4 (180-248)||(31530112-31530181)
chr4 (180-263)||(46176589-46176673)
chr4 (180-248)||(32648923-32648992)
chr4 (257-318)||(51258736-51258797)
chr4 (186-219)||(53300037-53300070)
chr4 (165-217)||(36886850-36886902)
chr4 (186-283)||(47669868-47669966)
chr4 (236-288)||(49028179-49028231)
[»] chr7 (15 HSPs)
chr7 (156-288)||(42382680-42382815)
chr7 (176-260)||(13858403-13858488)
chr7 (167-244)||(20513405-20513483)
chr7 (181-286)||(45510397-45510503)
chr7 (181-283)||(28437462-28437565)
chr7 (180-248)||(23620713-23620781)
chr7 (189-225)||(35323648-35323684)
chr7 (165-229)||(24923298-24923364)
chr7 (180-283)||(5967972-5968076)
chr7 (180-314)||(19644318-19644455)
chr7 (181-219)||(31770262-31770300)
chr7 (181-248)||(33810132-33810200)
chr7 (181-288)||(14676283-14676391)
chr7 (180-283)||(41002170-41002274)
chr7 (189-266)||(45066798-45066876)
[»] chr1 (20 HSPs)
chr1 (176-351)||(48865401-48865582)
chr1 (216-331)||(51572248-51572363)
chr1 (165-244)||(23079871-23079951)
chr1 (181-314)||(30543283-30543417)
chr1 (180-283)||(33991599-33991703)
chr1 (181-283)||(15463868-15463972)
chr1 (186-283)||(14153169-14153267)
chr1 (181-284)||(41432682-41432786)
chr1 (168-228)||(40136131-40136193)
chr1 (187-313)||(43036249-43036376)
chr1 (181-248)||(2175427-2175495)
chr1 (176-245)||(32123558-32123628)
chr1 (180-283)||(42161972-42162076)
chr1 (165-219)||(48021296-48021349)
chr1 (174-241)||(49547080-49547149)
chr1 (181-286)||(52073378-52073484)
chr1 (180-282)||(23871382-23871485)
chr1 (176-248)||(43530213-43530286)
chr1 (165-205)||(9595698-9595738)
chr1 (219-287)||(9893906-9893974)
[»] scaffold1562 (1 HSPs)
scaffold1562 (181-283)||(198-301)
[»] scaffold1158 (1 HSPs)
scaffold1158 (181-283)||(2292-2395)
[»] scaffold0952 (1 HSPs)
scaffold0952 (180-283)||(3589-3693)
[»] scaffold0717 (1 HSPs)
scaffold0717 (181-281)||(1638-1739)
[»] chr8 (11 HSPs)
chr8 (227-288)||(2457842-2457903)
chr8 (181-285)||(13258542-13258647)
chr8 (168-248)||(32533273-32533354)
chr8 (181-286)||(15108184-15108290)
chr8 (165-242)||(32502932-32503009)
chr8 (176-245)||(33896515-33896585)
chr8 (181-266)||(35856450-35856536)
chr8 (181-219)||(39418174-39418212)
chr8 (180-236)||(32874838-32874895)
chr8 (189-246)||(35353923-35353980)
chr8 (180-281)||(3404493-3404595)
[»] scaffold0028 (1 HSPs)
scaffold0028 (180-283)||(35374-35478)
[»] chr6 (3 HSPs)
chr6 (180-283)||(24734938-24735042)
chr6 (225-314)||(13380558-13380647)
chr6 (178-263)||(6026249-6026335)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 156 - 374
Target Start/End: Original strand, 13839455 - 13839673
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaacacggattt 255  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13839455 tcttccatcttctttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaacacggattt 13839554  T
Q  256 gatttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaaac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13839555 gatttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcccccattttgaggggattttgtatttcgaagaaaaataaaac 13839654  T
Q  356 cccccaatccgttcatctc 374  Q
    |||||||||||||||||||    
T  13839655 cccccaatccgttcatctc 13839673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13839300 - 13839391
Alignment:
Q  1 tacataggttttgctgcatttgtgaatgttggtaggttcatatgttatgctgtaatttttgaatatggaaagaattcttaggatctagtagc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13839300 tacataggttttgctgcatttgtgaatgttggtaggttcatatgttatgctgtaatttttgaatatggaaagaattcttaggatctagtagc 13839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 5696477 - 5696608
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaacacggattt 255  Q
    ||||||||||||||||| |||||| |||||||||||||||||||  ||| |||||||||||||| ||||| |||||| |||||||||||||||  ||||     
T  5696477 tcttccatcttttttgaaatagtgattttgtagagaatgataaactaatgtttatgattaatatatttaa-ttttgaaagtattataacaacatagattg 5696575  T
Q  256 gatttgaagaagttatctaaaccctccaaaatc 288  Q
     ||| |||||| |||| ||||||||||||||||    
T  5696576 aattcgaagaaattatataaaccctccaaaatc 5696608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 356
Target Start/End: Complemental strand, 43265318 - 43265157
Alignment:
Q  196 taaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaatcttcgta 294  Q
    ||||||||| |||||  ||||||| |||| | |||| ||| |||||||||||||   ||||||||||||||| ||||||||| ||||| |  || || |     
T  43265318 taaatgaatgtttatcgttaatatatttttagtttttagattattataacaacattaatttgatttgaagaatttatctaaagcctcctatttcctcctc 43265219  T
Q  295 caataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaaacc 356  Q
    |||| | ||||||||||||| ||||||||||||||||||||||   ||||||||| ||||||    
T  43265218 caattcaatttttgagttcccccattttgaggggattttgtatcatgaagaaaaacaaaacc 43265157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 12150734 - 12150598
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    ||||||||| ||||||||||||||| |||||||||||||  ||||||| |||||||| | |||| ||| |  ||||  ||||| |||| |||||||||||    
T  12150734 ttttgtagataatgataaatgaatacttatgattaatatatttttaatctttgagagcaatatagcaagatagattgaatttggagaatttatctaaacc 12150635  T
Q  279 ctccaaaatcttcgtacaataccatttttgagttcct 315  Q
    | |||||||| || | |||||| |||||| |||||||    
T  12150634 cgccaaaatcctcctccaatacaattttttagttcct 12150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 31632995 - 31632864
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    ||||||||||||||||||||||||  || |||||||||| |||| | |||||| |   |||||||||||  |||| ||||||||||| |||| ||| |||    
T  31632995 ttttgtagagaatgataaatgaatgcttctgattaatatatttttaattttgaca---ttataacaacatagattggatttgaagaatttatttaagccc 31632899  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||| |||| | ||||||  || |||||||||    
T  31632898 tccaaaaccttccttcaatacatttcttgagttcc 31632864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 19389748 - 19389882
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| |||  ||||||||||||| |||| | |||| | | ||||||||| |||  ||||  |||||||||| | || |||||||    
T  19389748 ttttttagagaatgataaattaatgcttatgattaatatatttttaattttaaaaatattataactacatagattaaatttgaagaattcatgtaaaccc 19389847  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||||| || | |||||| |||||| ||||||    
T  19389848 tccaaaatcctcctccaatacaattttttagttcc 19389882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 2021142 - 2021073
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    ||||| ||||||||||||||| ||||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  2021142 gttttttagagaatgataaattaatatttatgattaatatacttttaa-ttttaagaatattataacaaca 2021073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 11168400 - 11168295
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||| || |||| |||||||| |  ||||| ||||||||  |||||||||||| ||||  |||||||||||||||| |||||||| ||    
T  11168400 ttttttagagaatgatgaacgaatgtttatgatcagtatattattaatttta-agagtattataataacatagatttgatttgaagaatttatctaagcc 11168302  T
Q  279 ctccaaa 285  Q
    || ||||    
T  11168301 cttcaaa 11168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 27489895 - 27489848
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat-ttttaatttttga 232  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  27489895 tagagaatgataaatgaatatttatgattaatatattttaaattttga 27489848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 1175866 - 1175904
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat 219  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1175866 ttttgtagagaatgataaatgaatgtttatgattaatat 1175904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 37909152 - 37909020
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaata--tttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||| ||| ||||| ||| |||  |||||||||||  ||||||||||||||| |  ||||  |||||||||| | || ||||||    
T  37909152 ttttttagagaatgataaattaatgtttataattgataaatttttaatttta-agagtattataacaatatagattgaatttgaagaattcatataaacc 37909054  T
Q  279 ctccaaaatcttcgtacaataccatttttgagtt 312  Q
    |||||||| | || | |||||| | |||||||||    
T  37909053 ctccaaaaccctcctccaatacaacttttgagtt 37909020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 1176458 - 1176375
Alignment:
Q  164 cttttttgagatagtggttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaaca 248  Q
    ||||||||||| | |  |||||||||||||||||||||||| |||||| |||  ||||||||||| ||   ||||||||||||||||    
T  1176458 cttttttgagagaatttttttgtagagaatgataaatgaatttttatgcttaatatatttttaatatt---gagtattataacaaca 1176375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 2163992 - 2164060
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataacaaca 248  Q
    |||||||||||||||||||| | || |||| |||||  ||||||||| |||||| |||||||||||||||    
T  2163992 ttttgtagagaatgataaattagtacttatcattaaagtatttttaa-ttttgaaagtattataacaaca 2164060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 35701565 - 35701496
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    ||||| ||||||||||||||  |||| |||||||||||||  ||||| |||| ||| |||||||||||||    
T  35701565 gttttttagagaatgataaactaatacttatgattaatatactttaaattttaagaatattataacaaca 35701496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 9684686 - 9684822
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatt 254  Q
    |||||||  |||||||| | |||  |||| |||| |||||||||| |||  ||||||||||||| |||| | |||| ||| ||||||||| ||   ||||    
T  9684686 tcttccacattttttgaaagagtaattttttagaaaatgataaattaatgcttatgattaatatatttttaattttaagaatattataactacttagatt 9684785  T
Q  255 tgatttgaagaagttatctaaaccctccaaaatcttc 291  Q
     ||||||||||| | || ||||||| |||||| ||||    
T  9684786 agatttgaagaattcatgtaaaccccccaaaaccttc 9684822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 17668054 - 17668162
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||| ||||||||||| |||  ||||| ||||||| |||| | |||| ||| ||||||||| |||  ||||  |||||||||| | || |||||||    
T  17668054 ttttttagggaatgataaattaatgcttatgcttaatatattttcaattttaagaatattataactacatagattaaatttgaagaattcatgtaaaccc 17668153  T
Q  280 tccaaaatc 288  Q
    |||||||||    
T  17668154 tccaaaatc 17668162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 25626528 - 25626658
Alignment:
Q  185 gtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctcc 282  Q
    ||||| ||||||||||||||| || | ||||  ||||||||||| || ||| |||| |||||||||  || | |||||| |||| ||||| ||| || ||    
T  25626528 gtagataatgataaatgaatacttctcattagtatatttttaatctt-gagcgtatgataacaacatagaatggatttggagaatttatccaaatccccc 25626626  T
Q  283 aaaatcttcgtacaataccatttttgagttcc 314  Q
    |||||| || | || ||| |||||||||||||    
T  25626627 aaaatcctcattcagtacaatttttgagttcc 25626658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 25779650 - 25779588
Alignment:
Q  187 agagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaaca 248  Q
    |||||||||||||| ||||||||| ||||  |||||||||| |||| ||| |||||||||||||    
T  25779650 agagaatgataaattaatatttataattattatatttttaa-ttttaagaatattataacaaca 25779588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 33718343 - 33718275
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaac 247  Q
    ||||| ||||||||||||||  |||| ||||||||||||| |||| | |||| ||| ||||||||||||    
T  33718343 gttttttagagaatgataaactaatacttatgattaatatatttttaattttaagaatattataacaac 33718275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 11205017 - 11205210
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgatt-aatat-ttttaatttttgagagtattataacaacacggat 253  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||||| ||||||||| ||||| ||||   |||||||||||| ||   ||||  |||    
T  11205017 tcttccatcttttttgaaatagtgatcttgtagagaatggtaaatgaatgtttatgattcaatatatttttcattttgagagtatgat---aacatagat 11205113  T
Q  254 ttgatttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaa 353  Q
    | ||||| ||||| ||||||||||||||||||| | |  ||||||||    |||||||| | |||||||||||| ||||||||||| |||||||||||||    
T  11205114 tggatttaaagaaattatctaaaccctccaaaacccttatacaatac--agtttgagtttccccattttgagggaattttgtattt-gaagaaaaataaa 11205210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 38216438 - 38216545
Alignment:
Q  182 tttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||||||||||||||| |||||| ||||||||||||||  ||||||||||| |||||||||||| ||||  ||||  |||||||||| ||||||||||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaattttt-agagtattataaaaacatagattgaatttgaagaaattatctaaaccc 38216536  T
Q  280 tccaaaatc 288  Q
    |||||||||    
T  38216537 tccaaaatc 38216545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 5193226 - 5193158
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    ||||||| ||||| |||||||||| |||||||||||||| |||||| |||| ||| | |||||||||||    
T  5193226 ttttgtacagaataataaatgaatgtttatgattaatatattttaaatttttagaattttataacaaca 5193158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 8410848 - 8410918
Alignment:
Q  179 ggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    |||||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||| |||||||||||||    
T  8410848 ggttttttagagaatgataaattaatacttatgattaatatacttttaa-ttttaagaatattataacaaca 8410918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 25463665 - 25463731
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaa 246  Q
    |||| ||| ||||||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||    
T  25463665 ttttctagtgaatgataaataaatatttatgattaatataattttaattttt-cgagtattataacaa 25463731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 42644811 - 42644742
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataac 244  Q
    ||||||||||||||||||||||||| |||| ||||||| ||  |||||||||  ||||| |||||||||||    
T  42644811 agtggttttgtagagaatgataaattaatacttatgatcaatgtatttttaa-ctttgaaagtattataac 42644742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 4042126 - 4042022
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  4042126 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 4042028  T
Q  278 cctcca 283  Q
    ||||||    
T  4042027 cctcca 4042022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 13765858 - 13765962
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  13765858 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 13765956  T
Q  278 cctcca 283  Q
    ||||||    
T  13765957 cctcca 13765962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 14167109 - 14167011
Alignment:
Q  189 agaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaa 286  Q
    |||||||||||| ||| |||||| ||||||| |||| | || | ||| |||||||||||||  ||||  ||||||| || |||| ||||||||||||||    
T  14167109 agaatgataaatcaatgtttatggttaatatatttttaattctaagaatattataacaacatagattaaatttgaaaaaattatgtaaaccctccaaaa 14167011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 31550181 - 31550285
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||| ||||||  |||| |||||||| || | || |||||    
T  31550181 gttttttagagaatgataaactaatagttatgattaatatacttttaa-ttttaagaatattatgacaacatagattggatttgaaaaattcatataaac 31550279  T
Q  278 cctcca 283  Q
    ||||||    
T  31550280 cctcca 31550285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 32951037 - 32950999
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat 219  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  32951037 ttttttagagaatgataaattaatatttatgattaatat 32950999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 38023366 - 38023470
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||  |||||||||||||  ||||||||||  ||| |||||||||||||  |||| |||||||| || |||| |||||    
T  38023366 gttttttagagaatgataaactaattcttatgattaatatacttttaatttta-agaatattataacaacattgattggatttgaaaaatttatataaac 38023464  T
Q  278 cctcca 283  Q
     |||||    
T  38023465 tctcca 38023470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 40357619 - 40357535
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaa 263  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  |||| ||||||||    
T  40357619 gttttttagagaatgataaactaatacttatgattaatataattttaa-ttttaagaatattataacaacatagattggatttgaa 40357535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 36567198 - 36567301
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || ||||||    
T  36567198 ttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaacc 36567296  T
Q  279 ctcca 283  Q
    |||||    
T  36567297 ctcca 36567301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 14385241 - 14385107
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||| ||| ||||| ||||  ||||||||||||||  | | ||||||||| |||  ||||  |||||||||  | || ||||||    
T  14385241 ttttttagagaatgataaattaatgtttattattagtatatttttaattttaaaaa-tattataactacatagattaaatttgaagatttcatgtaaacc 14385143  T
Q  279 ctccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||| || || | |||||  |||||||||||||    
T  14385142 ctccaaattcctcctccaatataatttttgagttcc 14385107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 35812499 - 35812388
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaata---tttttaatttttgagagtattataacaacacggatttgatttgaagaagttatc 272  Q
    |||| ||||||||||||| ||||||||||  | ||||||||||   ||||||  |||||||  | |||||||||||  |||| |||||||| || |||||    
T  35812499 agtgtttttgtagagaatcataaatgaatgctcatgattaataaagttttta--ttttgaggatgttataacaacaaagattagatttgaaaaatttatc 35812402  T
Q  273 taaaccctccaaaa 286  Q
    ||| || |||||||    
T  35812401 taagccatccaaaa 35812388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 23613084 - 23613263
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatcta 274  Q
    |||||||||||||||||||||||| ||||   ||| ||||| || |||||| ||||||||||||||||| ||||  |||| |||||||| || |||||||    
T  23613084 agtggttttgtagagaatgataaacgaatcactataattaaaatattttaaattttgagagtattataataacatagattggatttgaataatttatcta 23613183  T
Q  275 aaccctccaaaatcttc-gtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaa 353  Q
    ||||||||||||| |||  | ||||||  ||||||||||||  ||  || |||| |||||||||  | ||||||||||||    
T  23613184 aaccctccaaaatattctttccaatacattttttgagttccctcaaattaagggtattttgtataacaaagaaaaataaa 23613263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 358
Target Start/End: Original strand, 42157722 - 42157911
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaa 263  Q
    |||||||| | |||| ||||| |||||||||||||||||| ||||| ||| |||| |||| | ||||||||||||||||||||||     | ||||  ||    
T  42157722 ttttttgaaagagtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaattttgagagtattataacaaca-----tagattacaa 42157816  T
Q  264 gaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaaacccc 358  Q
    ||| ||||||||||||||||||| |||  | | |||  ||||||||| |||   |||||||||||||||||| ||  ||||||||| ||| ||||    
T  42157817 gaatttatctaaaccctccaaaaccttacttctatataatttttgagctccctgattttgaggggattttgtgttatgaagaaaaacaaaccccc 42157911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 42668230 - 42668052
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaata--tttttaatttttgagagtattataacaacacggat 253  Q
    ||||| || ||||| |||| |||| ||||||||| |||||||||||||| ||||| |||  ||  ||||||||||| |||| |||||||||||||  |||    
T  42668230 tcttctatatttttggagaaagtgtttttgtagataatgataaatgaatgtttatcattggtacatttttaatttt-gagaatattataacaacatagat 42668132  T
Q  254 tt----gatttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggat 330  Q
    |     ||||| || |  ||| ||||||||||||||||| || | |||||| |||||||||| ||||||||||||||||||    
T  42668131 tattaggattttaacat-ttagctaaaccctccaaaatcctcctccaatacaatttttgagtacctccattttgaggggat 42668052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 5166870 - 5167028
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatatttt-taatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    ||||||||||||| || ||||||| ||||| |||||||| || | | | ||| ||||||||| ||||||  |||| ||||||||||| |||| |||||||    
T  5166870 ttttgtagagaataattaatgaatgtttatcattaatatattcttaatgttgggagtattatgacaacaatgattggatttgaagaatttatttaaaccc 5166969  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatt 338  Q
    |  |||||  || | ||||   ||||||||||||| |||||||  ||||||||||||||    
T  5166970 taaaaaattgtcattcaattaaatttttgagttcccccatttttgggggattttgtatt 5167028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 340
Target Start/End: Original strand, 21777210 - 21777377
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccct 280  Q
    |||||||||||||||||||||||| ||||| |||||||| |||  | |||  | ||||||||||||    |||| ||||||||||| |||||||||||||    
T  21777210 ttttgtagagaatgataaatgaatgtttatcattaatatatttcttatttt-gtgtattataacaaggtagattagatttgaagaatttatctaaaccct 21777308  T
Q  281 ----------ccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttc 340  Q
              |||||| |||| | |||||| ||||||||||||| |||||||||||||||||||| ||||    
T  21777309 tcgaaacccaccaaaaccttctttcaatacaatttttgagttcc-ccattttgaggggattttgtgtttc 21777377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 17642751 - 17642647
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| ||||||||||||| |||||  ||||||| || |||| ||||     
T  17642751 gttttttagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaacatggattgaatttgaaaaatttatataaat 17642653  T
Q  278 cctcca 283  Q
    ||||||    
T  17642652 cctcca 17642647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 314
Target Start/End: Complemental strand, 34306759 - 34306625
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    ||||| || |||||||||||  ||||||||||||||||||  || | |||| ||| |||||||||||||  ||||  ||||||| || | || |||||||    
T  34306759 gttttttatagaatgataaactaatatttatgattaatatactttaattttaagaatattataacaacatagattgaatttgaaaaattcatataaaccc 34306660  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||| | ||   |||||| |||||||||||||    
T  34306659 tccaaaaccctcccccaatacaatttttgagttcc 34306625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 39478281 - 39478149
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttt-taatttttgagagtattataacaa-cacggat 253  Q
    ||||||||||||||| | | | ||  |||||||||||||||||| ||| | |||| ||||| ||||| | | |||| ||| ||||||||||| ||  |||    
T  39478281 tcttccatcttttttaataaaatgagtttgtagagaatgataaaagaagacttataattaacattttcttaattttaagaatattataacaaacatagat 39478182  T
Q  254 ttgatttgaagaagttatctaaaccctccaaaa 286  Q
    | | ||||||||| |||||||||||||||||||    
T  39478181 taggtttgaagaatttatctaaaccctccaaaa 39478149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 105088 - 105161
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaat--atttttaatttttgagagtattataacaaca 248  Q
    ||||||||||||||||||||||||| |||| |||||||||||  ||||||||  ||||| ||||||||| |||||    
T  105088 agtggttttgtagagaatgataaataaatacttatgattaatgcatttttaa-ctttgaaagtattatagcaaca 105161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 23615678 - 23615757
Alignment:
Q  164 cttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataa 243  Q
    |||||||||||||||| ||||||||||||| || ||||||   || | |||||||| ||||| || ||||||||||||||    
T  23615678 cttttttgagatagtgattttgtagagaattatgaatgaacgcttgtaattaatatatttaaattatgagagtattataa 23615757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 2420822 - 2420714
Alignment:
Q  179 ggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaa 276  Q
    |||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || ||||    
T  2420822 ggttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaa 2420724  T
Q  277 ccctccaaaa 286  Q
    ||||||||||    
T  2420723 ccctccaaaa 2420714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 15499203 - 15499325
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaa 263  Q
    |||||||| |||||   ||| ||||||||||||||  |||| ||||||||||||| |||||| |||| ||| ||||||||| |||  ||||  |||||||    
T  15499203 ttttttgaaatagtaaatttttagagaatgataaaataatacttatgattaatatattttaaattttaagaatattataactacatagattaaatttgaa 15499302  T
Q  264 gaagttatctaaaccctccaaaa 286  Q
     || |||| |||||||| |||||    
T  15499303 aaatttatgtaaacccttcaaaa 15499325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 25428830 - 25428726
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || |||| |||||    
T  25428830 gttttttagagaatgataaaataatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaatttatataaac 25428732  T
Q  278 cctcca 283  Q
    ||||||    
T  25428731 cctcca 25428726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 3334025 - 3333960
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaa 246  Q
    |||| ||||||||||||||| ||| ||||||||||||| |||| | |||| ||| |||||||||||    
T  3334025 ttttttagagaatgataaattaatgtttatgattaataattttcaattttaagaatattataacaa 3333960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 21856211 - 21856031
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaat--atttttaatttt-----tgagagtattataacaacacggatttgatttgaagaagttatc 272  Q
    ||||||||||||||  ||||| |||| |||||||||||  |||||||| |||     | | |||||||||||||||  |||| |||||||| || |||||    
T  21856211 gttttgtagagaattgtaaataaatacttatgattaatgtatttttaactttaaactttaaagtattataacaacatagattagatttgaaaaacttatc 21856112  T
Q  273 taaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaa 353  Q
     |||  | |||||||| || | |||||| | |||| |||||| |||  || |||||||||||||||  |||||||| ||||    
T  21856111 caaattccccaaaatcctccttcaatacaaatttttagttcccccaaattaaggggattttgtattatgaagaaaactaaa 21856031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 44401252 - 44401132
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatatttt-taatttttgagagtattataacaacacggatttgatttgaa 263  Q
    |||||| ||| ||||  |||||||||||||||||||  |||| |||  ||||||| || | | |||| ||| ||||||||||||| | ||| ||||||||    
T  44401252 ttttttaagagagtgagtttgtagagaatgataaatttatatgtattgttaatatattatcaattttaagattattataacaacatgtattggatttgaa 44401153  T
Q  264 gaagttatctaaaccctccaa 284  Q
    ||| ||| |||| ||||||||    
T  44401152 gaatttaactaagccctccaa 44401132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 1132855 - 1132989
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| ||| || ||| ||||||| |||| | |||| ||| ||||| ||| |||  ||||  |||| ||||| | || |||||||    
T  1132855 ttttttagagaatgataaattaatgttcatggttaatatatttttaattttaagaatattacaactacatagattaaatttaaagaattcatgtaaaccc 1132954  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||| | || | |||||| |||||||||||||    
T  1132955 tccaaaaccctcctccaatacaatttttgagttcc 1132989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 44979558 - 44979490
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaat--atttttaatttttgagagtattataacaaca 248  Q
    |||||||||||||||||||| | |  |||||||||||  |||||||| |||||| |||||||||||||||    
T  44979558 ttttgtagagaatgataaattattgcttatgattaatgaatttttaa-ttttgaaagtattataacaaca 44979490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 11500263 - 11500151
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||| ||| ||||| ||||  |||||||| | |||| ||| |||||||||||||   |||  |||||||||| | || |||||     
T  11500263 ttttttagagaatgataaattaatgtttataattaatatattttttaattttaagaatattataacaacatatattaaatttgaagaattaatgtaaact 11500164  T
Q  279 ctccaaaatcttc 291  Q
    |||||||| ||||    
T  11500163 ctccaaaaccttc 11500151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 24588290 - 24588383
Alignment:
Q  257 atttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaat 350  Q
    |||||||||| | || |||||||||||||| | ||   |||||| |||||||||||||||||  |   ||||||||||||||  ||||||||||    
T  24588290 atttgaagaattcatttaaaccctccaaaaccatcccccaatacaatttttgagttcctccaaatgagggggattttgtattatgaagaaaaat 24588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 32858986 - 32858885
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaa 284  Q
    ||||||||||||||| |||| ||| ||||||||| |||| | |||| ||| ||||||||| |||  ||||  |||||| ||| | || ||||||||||||    
T  32858986 tagagaatgataaattaatacttacgattaatatatttttaattttaagaatattataactacatagattaaatttgatgaattcatgtaaaccctccaa 32858887  T
Q  285 aa 286  Q
    ||    
T  32858886 aa 32858885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 34729263 - 34729307
Alignment:
Q  187 agagaatgataaatgaatatttatgatta--atatttttaatttt 229  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||    
T  34729263 agagaatgataaattaatatttatgattactatatttttaatttt 34729307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 36796580 - 36796517
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  36796580 tagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaaca 36796517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 46891547 - 46891446
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| |||||| |||||||| |||| ||||||||||||| |||| | |||| ||| |||||||||||||   |||  |||||||||| |||| |||| ||    
T  46891547 ttttttagagactgataaattaatacttatgattaatatatttttaattttaagaatattataacaacatatattaaatttgaagaatttatataaatcc 46891448  T
Q  280 tc 281  Q
    ||    
T  46891447 tc 46891446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 7302245 - 7302181
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataac 244  Q
    |||| ||||||||||||||| |||| ||||||||||||| |||| | |||| ||| |||||||||    
T  7302245 ttttttagagaatgataaatcaatacttatgattaatatatttttagttttaagaatattataac 7302181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 9241574 - 9241638
Alignment:
Q  185 gtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    ||||| |||||||||| |||| ||||||||||||| |||| | | |||||| |||||||||||||    
T  9241574 gtagataatgataaataaatacttatgattaatatatttttaatcttgagaatattataacaaca 9241638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 38593115 - 38593045
Alignment:
Q  179 ggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    |||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| | |||||||||||||||    
T  38593115 ggttttttagagaatgataaactaatacttatgattaatatgcttttaa-ttttaaaagtattataacaaca 38593045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 353
Target Start/End: Original strand, 56439295 - 56439454
Alignment:
Q  183 ttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccct 280  Q
    ||||||||||||||| |||||| || || ||||||||  ||||||||||| | | |||||||| ||||  ||||  |||||||||| |||||||||||||    
T  56439295 ttgtagagaatgatagatgaatgttaatcattaatatatttttaattttt-ataatattataataaca--gattatatttgaagaatttatctaaaccct 56439391  T
Q  281 ccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaataaa 353  Q
    ||          | |||||  |||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  56439392 cc----------ttcaatataatttttgagttcctccattttgaggggattttgtgttatgaagaaaaataaa 56439454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 32485917 - 32486030
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatct 273  Q
    ||||||||||| |||||||||||||||||  |  ||||||  |||||||||| |||| |||||||||||||| ||  |||| | |||||| || ||||||    
T  32485917 agtggttttgttgagaatgataaatgaatgctcgtgattagtatatttttaa-ttttaagagtattataacatcatagattgggtttgaaaaatttatct 32486015  T
Q  274 aaaccctccaaaatc 288  Q
    ||||| ||| |||||    
T  32486016 aaaccttcccaaatc 32486030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 32060808 - 32060704
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  32060808 gttttttagagaatgataaattaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 32060710  T
Q  278 cctcca 283  Q
    ||||||    
T  32060709 cctcca 32060704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 38317147 - 38317251
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  |||| |||||||| || | || |||||    
T  38317147 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattggatttgaaaaattcatataaac 38317245  T
Q  278 cctcca 283  Q
    ||||||    
T  38317246 cctcca 38317251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 40422993 - 40423079
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaa 266  Q
    |||| |||||| |||||||| |||||||||||||||||| |||| | |||| ||| |||||||||||||  ||||  ||||||||||    
T  40422993 ttttttagagagtgataaattaatatttatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaagaa 40423079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 42649986 - 42649877
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgatta--atatttttaatttt-tgagagtattataacaacacggatttgatttgaagaagttatctaaa 276  Q
    |||| ||||||||||||||||||||  | |||||||  ||||||||||||||  |||||||||||||||||   |||| |||||||| |  ||||||||     
T  42649986 gtttggtagagaatgataaatgaatgctcatgattaacatatttttaattttgagagagtattataacaacttagattggatttgaaaattttatctaag 42649887  T
Q  277 ccctccaaaa 286  Q
    || |||||||    
T  42649886 ccatccaaaa 42649877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 7182095 - 7182214
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttga 262  Q
    |||||||| | | ||||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||    
T  7182095 ttttttgaaagaatggttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttga 7182193  T
Q  263 agaagttatctaaaccctcca 283  Q
    | || | || |||||||||||    
T  7182194 aaaattcatataaaccctcca 7182214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 41844596 - 41844493
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||| ||||||||||| |  |||| |||||||| || | || ||||||    
T  41844596 ttttttagagaatgataaattaatacttatgattaatatacttttaa-ttttaagaatattataacaagatagattggatttgaaaaattcatataaacc 41844498  T
Q  279 ctcca 283  Q
    |||||    
T  41844497 ctcca 41844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 21730246 - 21730350
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    ||||| ||||||||||||||  |||| ||||||||||||| |||| | |||  ||| |||||||||||||  |||| ||||| ||||| | || ||||||    
T  21730246 gttttttagagaatgataaactaatacttatgattaatatatttttaatttcaagaatattataacaacatagattggatttaaagaattcatataaacc 21730345  T
Q  279 ctcca 283  Q
    |||||    
T  21730346 ctcca 21730350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 23708297 - 23708163
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| ||||||  |||||  |||| |||||||| || | || ||||||    
T  23708297 ttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattatggcaacatagattggatttgaaaaattcatataaacc 23708199  T
Q  279 ctccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||| |||| ||   |||||| |||||||||||||    
T  23708198 ctccataatcctcccccaatacaatttttgagttcc 23708163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 28880152 - 28880044
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| |||||| |||||||| ||| |||||||||||||| |||| | |||| ||| |||||||||||||   |||  |||||||||| | || |||| ||    
T  28880152 ttttttagagagtgataaattaatgtttatgattaatatatttttaattttaagaatattataacaacatatattaaatttgaagaattcatataaatcc 28880053  T
Q  280 tccaaaatc 288  Q
    |||||||||    
T  28880052 tccaaaatc 28880044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 49936663 - 49936563
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| |||  ||||||||||||| |||| | |||| ||| |||||||||||||  ||||  |||||||||| | || |||||||    
T  49936663 ttttttagagaatgataaattaatgcttatgattaatatatttttaattttaagaatattataacaacatagattgaatttgaagaattcatataaaccc 49936564  T
Q  280 t 280  Q
    |    
T  49936563 t 49936563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 51431105 - 51431037
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    |||| ||||||||||||||  |||||||||||||||||| |||| | |||| ||| |||||||||||||    
T  51431105 ttttttagagaatgataaagtaatatttatgattaatatatttttaattttaagaatattataacaaca 51431037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 52594551 - 52594649
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctcca 283  Q
    ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  |||| |||||||| || | || |||||||||||    
T  52594551 tagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattagatttgaaaaattcatataaaccctcca 52594649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 31530181 - 31530112
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    ||||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||| |||||||||||||    
T  31530181 gttttttagagaatgataaattaatacttatgattaatatacttttaa-ttttaagaatattataacaaca 31530112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 46176673 - 46176589
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataacaacacggatttgatttgaa 263  Q
    ||||||||||||||||||||| | || ||||||||||  |||||||||  ||||| ||||||||||||| |  |||| ||||||||    
T  46176673 gttttgtagagaatgataaataagtacttatgattaatgtatttttaa-ctttgaaagtattataacaatatagattagatttgaa 46176589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 32648923 - 32648992
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    ||||| ||||||||||||||  |||| ||||||||||||| |||| | |||| ||| |||||||||||||    
T  32648923 gttttttagagaatgataaactaatacttatgattaatatatttttaattttaagaatattataacaaca 32648992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 51258736 - 51258797
Alignment:
Q  257 atttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcctcca 318  Q
    |||||||||| || | |||| |||||||||||||| | |||| | |||||||||||||||||    
T  51258736 atttgaagaatttgtataaatcctccaaaatcttcatccaatgcaatttttgagttcctcca 51258797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 53300070 - 53300037
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat 219  Q
    ||||||||||||||| ||||||||||||||||||    
T  53300070 tagagaatgataaattaatatttatgattaatat 53300037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 36886902 - 36886850
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaat 217  Q
    |||||||||| |||| |||| |||| |||||||||| |||| |||||||||||    
T  36886902 ttttttgagagagtgattttatagaaaatgataaataaatacttatgattaat 36886850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 47669966 - 47669868
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctcca 283  Q
    ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||||||||    
T  47669966 tagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaaccctcca 47669868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 49028231 - 49028179
Alignment:
Q  236 tattataacaacacggatttgatttgaagaagttatctaaaccctccaaaatc 288  Q
    |||| ||||||||  |||||||||| ||||| |||||||| ||||||||||||    
T  49028231 tattgtaacaacattgatttgattttaagaatttatctaagccctccaaaatc 49028179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 42382680 - 42382815
Alignment:
Q  156 tcttccatcttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat---ttttaatttttgagagtattataacaacacgga 252  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||  || ||||| || || ||   |||||  ||||||||||||||||||||||  ||    
T  42382680 tcttccatcttttttgaaatagtgatgttgtagggaatgataaattgatgtttataatcaacatatattttatattttgagagtattataacaacataga 42382779  T
Q  253 tttgatttgaagaagttatctaaaccctccaaaatc 288  Q
    ||   ||||||| | ||||||||||| |||||||||    
T  42382780 ttgagtttgaagtaattatctaaaccttccaaaatc 42382815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 13858488 - 13858403
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgattt 260  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||| |||| | | |||||||||||||||||||  ||||| |||||    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatatgtttttaatattgagagtattataacaacgtggattagattt 13858403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 20513483 - 20513405
Alignment:
Q  167 ttttgagatagtggttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataac 244  Q
    |||||||| | ||||||||||||||||||||||| |||| ||||||||||  |||||||||  ||||| |||||||||||    
T  20513483 ttttgagagaatggttttgtagagaatgataaataaatacttatgattaatgtatttttaa-ctttgaaagtattataac 20513405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 45510503 - 45510397
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| ||| |||||||||||||| |||||| |||| | | ||||||||| ||   ||||  |||||||||| |  |||||||||    
T  45510503 ttttttagagaatgataaattaatgtttatgattaatatattttaaattttaaaaatattataactacttagattaaatttgaagaattcgtctaaaccc 45510404  T
Q  280 tccaaaa 286  Q
    |||||||    
T  45510403 tccaaaa 45510397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 28437462 - 28437565
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || ||||||    
T  28437462 ttttttagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattgatataaacc 28437560  T
Q  279 ctcca 283  Q
    |||||    
T  28437561 ctcca 28437565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 23620713 - 23620781
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatatttttaatttttgagagtattataacaaca 248  Q
    ||||| ||||||||||||||  |||| ||||||||||||| ||| | |||| ||| |||||||||||||    
T  23620713 gttttttagagaatgataaactaatacttatgattaatatattttaattttaagaatattataacaaca 23620781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 35323684 - 35323648
Alignment:
Q  189 agaatgataaatgaatatttatgattaatatttttaa 225  Q
    |||||||||||| ||||||||||||||||||||||||    
T  35323684 agaatgataaattaatatttatgattaatatttttaa 35323648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 24923298 - 24923364
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgatta--atatttttaatttt 229  Q
    |||||||| | ||||||||| ||||||||||||||| |||  |||||||||  ||||||||||||||    
T  24923298 ttttttgaaagagtggttttttagagaatgataaattaatgattatgattaatatatttttaatttt 24923364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 5967972 - 5968076
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  5967972 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 5968070  T
Q  278 cctcca 283  Q
    ||||||    
T  5968071 cctcca 5968076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 314
Target Start/End: Complemental strand, 19644455 - 19644318
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatatt--tttaatttttgagagtattataacaacacggatttgatttgaagaagtt-atctaaa 276  Q
    ||||| |||||||| |||||| |||| |||||||||||| |  ||| | |||| ||| |||||||||||||  ||||  ||||||| || || || ||||    
T  19644455 gttttttagagaattataaattaatacttatgattaataatacttttaattttaagaatattataacaacatagattgaatttgaaaaaattcatataaa 19644356  T
Q  277 ccctccaaaatcttcgtacaataccatttttgagttcc 314  Q
     ||||||||| | || | |||||| |||||||||||||    
T  19644355 tcctccaaaaccctcatccaatacaatttttgagttcc 19644318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 31770300 - 31770262
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat 219  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  31770300 ttttgtagagaatgataaataaatgtttatgattaatat 31770262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 33810132 - 33810200
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    |||| ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  33810132 ttttttagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaaca 33810200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 14676391 - 14676283
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||| ||||||||||| |||  ||||| ||||||| |||| | |||| ||| ||||||||| |||  ||||  |||||||||| | || |||||||    
T  14676391 ttttttagggaatgataaattaatgcttatggttaatatattttcaattttaagaatattataactacatagattaaatttgaagaattcatgtaaaccc 14676292  T
Q  280 tccaaaatc 288  Q
    |||||||||    
T  14676291 tccaaaatc 14676283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 41002170 - 41002274
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    ||||| |||| |||||||||  |||| ||||||||||||| |||| | |||| ||| |||||||||||||  ||||  ||||||| || | || ||||||    
T  41002170 gttttttagataatgataaactaatacttatgattaatatatttttaattttaagaatattataacaacatagattgaatttgaaaaattcatataaacc 41002269  T
Q  279 ctcca 283  Q
    |||||    
T  41002270 ctcca 41002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 45066876 - 45066798
Alignment:
Q  189 agaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaacacggatttgatttgaagaa 266  Q
    |||||||||||| ||||||||||||||  |||||||||| |||| |||  ||||||||||||  ||||  ||||||||||    
T  45066876 agaatgataaattaatatttatgattaacatatttttaa-ttttaagaacattataacaacatagattgaatttgaagaa 45066798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 351
Target Start/End: Complemental strand, 48865582 - 48865401
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgatta--atatttttaatttttg----agagtattataacaacacggatttgatttgaagaagtt 269  Q
    |||| ||||||||||||| ||||||||||  |||||||||  |||||||| |||||      |||||| ||||||||||  |||| ||||||||||| ||    
T  48865582 agtgtttttgtagagaataataaatgaatgcttatgattactatatttttcattttgagagtagagtagtataacaacatagattggatttgaagaactt 48865483  T
Q  270 atctaaaccctccaaaatcttcgtacaataccatttttgagttcctccattttgaggggattttgtatttcgaagaaaaata 351  Q
    || ||| |||||||||||| ||   ||||||  ||||| |  |||| ||||||| || |||||||||||  |||||||||||    
T  48865482 atgtaagccctccaaaatcctcccccaatacagttttttaaatccttcattttggggagattttgtattatgaagaaaaata 48865401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 51572363 - 51572248
Alignment:
Q  216 atatttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaat-cttcgtacaataccatttttgagttcc 314  Q
    |||||||||||||| |||||||||||| |||||  ||||  |||| ||||| |||||||||| || |||||| | | || |||||| |||||||||||||    
T  51572363 atatttttaatttt-gagagtattatagcaacatagattaaatttaaagaatttatctaaactcttcaaaatcccttgttcaatacaatttttgagttcc 51572265  T
Q  315 tccattttgaggggatt 331  Q
      |||||||| ||||||    
T  51572264 ctcattttgaagggatt 51572248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 23079951 - 23079871
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataac 244  Q
    |||||||||| |||| |||| ||||||||||||||| |||| ||||||||||  |||||||||  ||||| |||||||||||    
T  23079951 ttttttgagagagtgattttatagagaatgataaataaatacttatgattaatgtatttttaa-ctttgaaagtattataac 23079871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 30543283 - 30543417
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| |||| ||||||||||||| |||| | |||| ||| ||| ||||| | |  ||||  |||||||||| | || |||||||    
T  30543283 ttttttagagaatgataaattaatacttatgattaatatatttttaattttaagaatatcataactatatagattaaatttgaagaattcatgtaaaccc 30543382  T
Q  280 tccaaaatcttcgtacaataccatttttgagttcc 314  Q
    ||||||| | ||   |||||| |||||||||||||    
T  30543383 tccaaaaccctccagcaatacaatttttgagttcc 30543417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 33991703 - 33991599
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  |||||||||| || || | || |||||    
T  33991703 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagatttgatttaaaaaattcatataaac 33991605  T
Q  278 cctcca 283  Q
    ||||||    
T  33991604 cctcca 33991599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 15463972 - 15463868
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  |||| |||||||||||||  ||||||||||| ||| ||||||||||| |  ||||  ||||||| || | || ||||||    
T  15463972 ttttttagagaatgataaactaatacttatgattaatatacttttaatttttaagaatattataacaaaatagattgaatttgaaaaattcatataaacc 15463873  T
Q  279 ctcca 283  Q
    |||||    
T  15463872 ctcca 15463868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 14153267 - 14153169
Alignment:
Q  186 tagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctcca 283  Q
    ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||||||||    
T  14153267 tagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattaatataaaccctcca 14153169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 41432682 - 41432786
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||| | |||| ||| ||||||||| |||  ||||  |||||||||| | || |||||||    
T  41432682 ttttttagagaataataaattaatacttatgattaatatatttttaattttaagaatattataactacatagattaaatttgaagaattcatgtaaaccc 41432781  T
Q  280 tccaa 284  Q
    |||||    
T  41432782 tccaa 41432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 40136131 - 40136193
Alignment:
Q  168 tttgagatagtggttttgtagagaatgataaatgaatatttatgattaat--atttttaattt 228  Q
    ||||||| |||  |||||||||||||||||||| ||| ||||||||||||  |||||||||||    
T  40136131 tttgagagagtatttttgtagagaatgataaattaatgtttatgattaatagatttttaattt 40136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 313
Target Start/End: Original strand, 43036249 - 43036376
Alignment:
Q  187 agagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaa 285  Q
    ||||| |||||||| || | ||||||||||||| |||| | |||| ||| |||||||||||||  ||||  |||||||||| | || |||||||||| ||    
T  43036249 agagagtgataaattaagacttatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaagaattcatataaaccctcccaa 43036348  T
Q  286 atcttcgtacaataccatttttgagttc 313  Q
    | || | | |||||| |||||| |||||    
T  43036349 acctccctccaatacaattttttagttc 43036376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 2175495 - 2175427
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    |||| ||||||||||||||  ||||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  2175495 ttttttagagaatgataaactaatatttatgattaatatacttttaa-ttttaagaatattataacaaca 2175427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 32123628 - 32123558
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataaca 245  Q
    |||| ||||||| |||||||||||||||| ||||| |||||||| || | | |||||||| ||||||||||    
T  32123628 agtgtttttgtaaagaatgataaatgaatgtttatcattaatatattgttaattttgagaatattataaca 32123558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 42161972 - 42162076
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  ||||||||||||||||||  |||||| |||| | | |||||||||||||  ||||  ||||||| || | || |||||    
T  42161972 gttttttagagaatgataaactaatatttatgattaatatacttttaa-ttttaaaaatattataacaacatagattgaatttgaaaaattcatataaac 42162070  T
Q  278 cctcca 283  Q
    ||||||    
T  42162071 cctcca 42162076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 48021296 - 48021349
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat 219  Q
    ||||||||||  ||| |||||||||||||||||||| |||||||| |||||||||    
T  48021296 ttttttgagagggtgtttttgtagagaatgataaat-aatatttacgattaatat 48021349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 49547149 - 49547080
Alignment:
Q  174 atagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattat 241  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||  |||||| |||||  ||||||||    
T  49547149 atagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaattttggaagtattat 49547080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 52073378 - 52073484
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| ||  |||||||||||||| |||| | |||| ||| ||||||||| ||   ||||  ||||||| || | ||||||||||    
T  52073378 ttttttagagaatgataaattaacgtttatgattaatatatttttaattttaagaatattataactacttagattgaatttgaaaaattcatctaaaccc 52073477  T
Q  280 tccaaaa 286  Q
    |||||||    
T  52073478 tccaaaa 52073484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 23871382 - 23871485
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  23871382 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 23871480  T
Q  278 cctcc 282  Q
    |||||    
T  23871481 cctcc 23871485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 43530213 - 43530286
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaaca 248  Q
    |||| |||| |||||| |||||||| |||  ||||||||||||| |||| | |||| |||||||||||||||||    
T  43530213 agtgtttttttagagagtgataaattaatgcttatgattaatatatttttaattttaagagtattataacaaca 43530286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 9595738 - 9595698
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaata 205  Q
    |||||||||| ||| ||||||||||||||||||||| ||||    
T  9595738 ttttttgagaaagtcgttttgtagagaatgataaattaata 9595698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 9893906 - 9893974
Alignment:
Q  219 tttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaat 287  Q
    ||||| |||||||||| ||||||||||||| | |  |||||||||||| ||| | || |||||||||||    
T  9893906 ttttttatttttgagaatattataacaacatgaaaatgatttgaagaatttaccgaagccctccaaaat 9893974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 301 - 198
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  |||| |||||||||||||  ||||||||||  ||| |||||||||||||  |||| |||||||| || |||| ||||||    
T  301 ttttttagagaatgataaactaatacttatgattaatatacttttaatttta-agaatattataacaacatagattggatttgaaaaatttatataaacc 203  T
Q  279 ctcca 283  Q
    |||||    
T  202 ctcca 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 2292 - 2395
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaacc 278  Q
    |||| ||||||||||||||  |||| |||||||||||||  ||||||||||  ||| |||||||||||||  |||| |||||||| || |||| ||||||    
T  2292 ttttttagagaatgataaactaatacttatgattaatatacttttaatttta-agaatattataacaacatagattggatttgaaaaatttatataaacc 2390  T
Q  279 ctcca 283  Q
    |||||    
T  2391 ctcca 2395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 3589 - 3693
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  |||||||||| || || | || |||||    
T  3589 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagatttgattttaaaaattcatataaac 3687  T
Q  278 cctcca 283  Q
    ||||||    
T  3688 cctcca 3693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 1739 - 1638
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||  |||| ||||||||||||| |||| | |||| ||| |||||||||||||  |||| |||||||| || | || |||||||    
T  1739 ttttttagagaatgataaactaatacttatgattaatatatttttaattttaagaatattataacaacatagattggatttgaaaaattcatataaaccc 1640  T
Q  280 tc 281  Q
    ||    
T  1639 tc 1638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 2457842 - 2457903
Alignment:
Q  227 ttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaatc 288  Q
    ||||||||||||||||||||||  |||| |||||||| || |||| ||| ||||||||||||    
T  2457842 ttttgagagtattataacaacatagattggatttgaataatttatttaagccctccaaaatc 2457903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 13258647 - 13258542
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| |||  ||| ||||||||| |||| | |||| |||||||| ||| ||||  |||| ||||||||||| | || |||||||    
T  13258647 ttttttagagaatgataaattaatgcttacgattaatatatttttaattttaagagtattctaagaacatagattggatttgaagaattcatataaaccc 13258548  T
Q  280 tccaaa 285  Q
    ||||||    
T  13258547 tccaaa 13258542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 32533354 - 32533273
Alignment:
Q  168 tttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 248  Q
    ||||||| |||||||||| ||||||||| ||| ||||  | |||||||||||  |||||| |||||| |||||||||||||||    
T  32533354 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaa-ttttgaaagtattataacaaca 32533273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 15108184 - 15108290
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatattttta-atttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccc 279  Q
    |||| ||||||||||||||| || | |||||||||||||  ||| | |||| ||| |||||||||||||  ||||| ||||||| || | || ||| |||    
T  15108184 ttttttagagaatgataaattaacacttatgattaatatacttataattttaagaatattataacaacatagatttaatttgaaaaattcatataatccc 15108283  T
Q  280 tccaaaa 286  Q
    |||||||    
T  15108284 tccaaaa 15108290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 32503009 - 32502932
Alignment:
Q  165 ttttttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattata 242  Q
    |||||||| |||||  |||||||||||||||| ||| ||| ||||| |||||||| |||| | ||||||||||||||||    
T  32503009 ttttttgaaatagtaattttgtagagaatgat-aataaatgtttattattaatatatttttaattttgagagtattata 32502932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 33896585 - 33896515
Alignment:
Q  176 agtggttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataaca 245  Q
    |||| |||||||||||||||||||| ||||   ||||||||||| |||| | |||||| ||||||||||||    
T  33896585 agtgattttgtagagaatgataaattaatacaaatgattaatatatttttaattttgaaagtattataaca 33896515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 35856450 - 35856536
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagtattataacaacacggatttgatttgaagaa 266  Q
    |||| ||||||||||||| | |||||||||||| ||||| |||| | || | ||| ||||||||||| |  ||||||||||||||||    
T  35856450 ttttttagagaatgataagttaatatttatgatgaatatatttttaattataagaatattataacaatatagatttgatttgaagaa 35856536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 39418212 - 39418174
Alignment:
Q  181 ttttgtagagaatgataaatgaatatttatgattaatat 219  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  39418212 ttttgtagggaatgataaatgaatgtttatgattaatat 39418174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 32874895 - 32874838
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat-ttttaatttttgagagt 236  Q
    |||||||||| ||||| |||||||| |||||||||||||| |||||| |||| |||||    
T  32874895 gttttgtagataatgaaaaatgaatgtttatgattaatatattttaaattttaagagt 32874838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 35353980 - 35353923
Alignment:
Q  189 agaatgataaatgaatatttatgatta--atatttttaatttttgagagtattataacaa 246  Q
    |||||||||||| ||||||||||||||  ||||||||||||||  ||| |||||||||||    
T  35353980 agaatgataaattaatatttatgattaatatatttttaatttt--agaatattataacaa 35353923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 3404493 - 3404595
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  3404493 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 3404591  T
Q  278 cctc 281  Q
    ||||    
T  3404592 cctc 3404595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 35374 - 35478
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  35374 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 35472  T
Q  278 cctcca 283  Q
    ||||||    
T  35473 cctcca 35478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 24735042 - 24734938
Alignment:
Q  180 gttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaacacggatttgatttgaagaagttatctaaac 277  Q
    ||||| ||||||||||||||  |||| |||||||||||||  |||||| |||| ||| |||||||||||||  ||||  ||||||| || | || |||||    
T  24735042 gttttttagagaatgataaactaatacttatgattaatatacttttaa-ttttaagaatattataacaacatagattgaatttgaaaaattcatataaac 24734944  T
Q  278 cctcca 283  Q
    ||||||    
T  24734943 cctcca 24734938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 13380647 - 13380558
Alignment:
Q  225 atttttgagagtattataacaacacggatttgatttgaagaagttatctaaaccctccaaaatcttcgtacaataccatttttgagttcc 314  Q
    |||||| ||| ||||||||| |||  ||||  |||||||||| |||| ||||| |||||||| | || | |||||| |||||||||||||    
T  13380647 atttttaagaatattataactacatagattaaatttgaagaatttatgtaaacgctccaaaaccctcttccaatacaatttttgagttcc 13380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 6026335 - 6026249
Alignment:
Q  178 tggttttgtagagaatgataaatgaatatttatgattaa--tatttttaatttttgagagtattataacaacacggatttgatttgaa 263  Q
    |||||||||| |||||||||||| |||| ||||||||||  |||||||||  ||||| | ||||||||||| |  |||| ||||||||    
T  6026335 tggttttgtatagaatgataaataaatacttatgattaatgtatttttaa-ctttgaaaatattataacaatatagattggatttgaa 6026249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University